Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi286g00011 ATGGTTAATCCCGCCACTGCTACTATGGCTAACATTATTGTTGGAGTACCTTCTCTTTCTCTTCCTTCATTACACTCAACAAATTCAAATACTTTCACTCTCAACTCCAAAATTAAGACCCAAAATCATAAACTTCATCTCAACTTCTCACAAACCAACCACACAACAAACCCATTTCCATCATCAAAATCACTCAGAAACAGAAGTAGTCGTTCTGTATTGGCTTGTCTTCCTCCTGCTTCTGAATCCTCATCTTCCAATAATACACCCTCTTCTACTTCTTCTTCAACTAAGCTATATGTCAGTGGGCTATCATTTGGTACAACGGAAGAGAGCTTACGAAATGCATTTAAGAATTTTGGTCAACTCGTGGAAGTCAATCTTGTGATGGATAAAATTGCGAATAGACCAAGAGGGTTTGCTTTCCTTCGCTACGAAACCGAAGAGGAATCCAACAAGGCTATAGAAGGAATGCATGGAAAGTTCCTGGATGGTAGAGTCATATTTGTGGAAATCGCCAAACCAAAATCAGAGCTGCGACAAAGATTCAAACAGAACACTATGTAG 567 0.3951 MVNPATATMANIIVGVPSLSLPSLHSTNSNTFTLNSKIKTQNHKLHLNFSQTNHTTNPFPSSKSLRNRSSRSVLACLPPASESSSSNNTPSSTSSSTKLYVSGLSFGTTEESLRNAFKNFGQLVEVNLVMDKIANRPRGFAFLRYETEEESNKAIEGMHGKFLDGRVIFVEIAKPKSELRQRFKQNTM 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi286g00011 188 MobiDBLite consensus disorder prediction 77 98 - -
Vivi286g00011 188 SMART rrm2_1 98 171 IPR003954 GO:0003676
Vivi286g00011 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Vivi286g00011 188 SMART rrm1_1 98 171 IPR000504 GO:0003723
Vivi286g00011 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 168 IPR000504 GO:0003723
Vivi286g00011 188 SUPERFAMILY RNA-binding domain, RBD 83 184 IPR035979 GO:0003676
Vivi286g00011 188 Gene3D - 35 186 IPR012677 -
Vivi286g00011 188 PANTHER NUCLEOLAR PROTEIN 8 76 183 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi286g00011 91 186 Eukaryotic Initiation Factors Gene Family AT4G34110 33.010 1.10e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi286g00011 - - gmx:100305561 197.593