Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi286g00010 ATGGAGTTTAAGGATCAAGTTGAAGGCACAAAGTCAACTATAATCGGCACAATTAGGAAGTGTCATTCCAAAGGTGGAGCAGTATCTGAAAATGTTGCGAAGTCACAGGATATACCTTCTGTTGGAAACGACCAGACTCCCAAGGCAAGGAAACCGTATACCATCACAAAACAAAGGGAGAAGTGGACTGAAGAAGAGCATCAAAAGTTCGTCGAGGCTTTGAAATTATATGGCCGCGGCTGGCGTCAAATTGAAGAACATATAGGATCTAAAACCGCAGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGGGAACCTGAAGGCAGCGCTGAAAGTCCTATTCAGCCAATTGACATACCTCCTCCTCGGCCAAAGAGGAAACCTCTTCATCCATACCCTCGCAAATCAGTTGACTCTTTCAAAGGACAGTCCGTCCTAAATGAATCGGAAACATCTCCATCGATTAACCTGTCAGTTGCAGAAAACAACACTCAATCTCCAACCTCGGTACTATCTGCATTTGGTTCGGAAGCATTTGGGTCAGCAGCATTTTCTGAGCAGACTAACAGATGCCTTTCTCCGAACTCTTGTACCACCGAGATTCACCCAGTCAGCTTGTCGCCTCTTGAAAAAGAAAACGATTGCCAGACATCGAAATCCTCTGAGGAGGAAGAGAAAGGAACTCCAGCTTCAGTTCCTTTATCCACCGAATCAAAACCAATTACATGCACGAAGTTGGAGATTATTTCTTCGGAAGAAACTCAATGTTTCAAGGAAGATGCTGCGGATATGCCACAGATCACTAGTATTAAGCTGTTTGGCAGAACAGTCTCTATGGTTGATACTCAGAAAACAATAAAGATCAAATCTGATGAAGCTGTTGAGAATGAGAAAGCTGGCATAGAAGAGGAATCAGAGAAACTTGTTACAGAACTATCACTAGGCATGTGTAGTGGTAATTGTCAAAGTACGGAACAACCGAAGGAGAATCCGTGCGTCGGAGAATGCGCATCATCTTTACCATGTTGGAGTTTGTACCAAGGCCTTCCAGCTTTGAGCCTCAAGCCATGCAATCATCAGATTTTAAGTCCTGTGCCTGTCAGGCCTTGTTTGAAGGTAAGAACTCGAGAGGAGGAAAGTTCTTGTACCGGTTCTAATACCGGATCGGTTTGTGACATGGAAAATCAAAGCAAGAACAATTCATCAGATACCGATGATACTCAAAGTAAAAAACATCATCATGAAGGAGTGTTCCTTAAGAAATCTGGAAGAGGGTTTGTACCATATAAAAGATGTGTATCTGAAAGAGACGAAAATTCTTTAATTGTTGGGTTGGAAGAAAGAGAAGGGCAAAGAGCTCGTGTGTGTTCATAG 1389 0.4291 MEFKDQVEGTKSTIIGTIRKCHSKGGAVSENVAKSQDIPSVGNDQTPKARKPYTITKQREKWTEEEHQKFVEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVREPEGSAESPIQPIDIPPPRPKRKPLHPYPRKSVDSFKGQSVLNESETSPSINLSVAENNTQSPTSVLSAFGSEAFGSAAFSEQTNRCLSPNSCTTEIHPVSLSPLEKENDCQTSKSSEEEEKGTPASVPLSTESKPITCTKLEIISSEETQCFKEDAADMPQITSIKLFGRTVSMVDTQKTIKIKSDEAVENEKAGIEEESEKLVTELSLGMCSGNCQSTEQPKENPCVGECASSLPCWSLYQGLPALSLKPCNHQILSPVPVRPCLKVRTREEESSCTGSNTGSVCDMENQSKNNSSDTDDTQSKKHHHEGVFLKKSGRGFVPYKRCVSERDENSLIVGLEEREGQRARVCS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi286g00010 462 CDD SANT 61 104 IPR001005 -
Vivi286g00010 462 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Vivi286g00010 462 MobiDBLite consensus disorder prediction 385 422 - -
Vivi286g00010 462 MobiDBLite consensus disorder prediction 145 159 - -
Vivi286g00010 462 SUPERFAMILY Homeodomain-like 53 107 IPR009057 -
Vivi286g00010 462 PANTHER SWI/SNF COMPLEX-RELATED 34 313 - -
Vivi286g00010 462 MobiDBLite consensus disorder prediction 208 241 - -
Vivi286g00010 462 Gene3D - 61 108 - -
Vivi286g00010 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Vivi286g00010 462 FunFam protein REVEILLE 6 isoform X1 61 109 - -
Vivi286g00010 462 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Vivi286g00010 462 Pfam Myb-like DNA-binding domain 59 102 IPR001005 -
Vivi286g00010 462 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Vivi286g00010 462 SMART sant 58 106 IPR001005 -
Vivi286g00010 462 MobiDBLite consensus disorder prediction 385 408 - -
Vivi286g00010 462 MobiDBLite consensus disorder prediction 108 159 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi286g00010 Myb_DNA-binding 3.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi286g00010 - - gmx:778089 579.326