LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi282g00010	ATGGCTATTGCTGGTTTGCACAGTGTGTCGATGCTGGATTCTTCTTTATTGAGGGACTCGCAGTCTCAGGCGTCTAGGAGGAGGGGAGATGGAAGAAGGGGTAGCACTCGGTCGTCTTCACTTTTGCACATGTGGCGAGAGATTGAGGATGAACATGCAGTGAGTCAAGTTCAAGGTAGCAATGGGTTGATTGCGGATCTTTCTTTAGAAGATACCCCTGATAGCCCAGAGATAGGACGGAGGCATGGTTTGGACGATGCTGTTTTTGGTGAGAATGAGTCGGAAACATGGTCACAGTCACAAAGTCAGAATGAATCACATGATGGTCATGAGGATTTAAACAATTCTAGCTGTGAAAATTCTTCTGTTTTTGGAGAAGTTGAAAGGGAAAGAGTGAGACGAATTTTCAGGGAATGGATGAATAGTGGATCTAGGGATTGTGGATCAACTATTTCCCGAAGAAGTAGCAGTCCAAGGAGAGAATGGCTTGGAGAAACTGAACAGGAAAGAGTGAGAGTTATAAGGGAGTGGGTACAAATGAGCAGCCAGCAGAGAAACGTTTCTTCTGGGGAAAACAGGGAACAGCCATGTGCTGAAATTGGTACACAAATTGAACGTGTGCGTGATGGATTTGTGGTTAATAGTGGTGGTGGCCAAAGTGAACATATACTGAGGGGTATGCGGAAAATACGTGGCAGGCAGGTTATGCTAGATATGCTTAAGAAGGCCGAGAGGGAAAGGCAGAGGGAAATTCAGGAGTTGCTGGACCATCAGGCTGTATCTCGTTTTCCCCATCGCAATCGCATTCAGGCATTGCTTAGAGGCAGGTTCTTGAGAAACGATAGATCCACTGATCATAACAGGTCCACATCTGTAGCAGAAAGTGAATTAGGCCTATTAAGGCGAAAGCAAACTGTATCAGGTCTAAGGGAAGGGTTCTTCTCTAGAATGGACAGTACAGGTTCCAGTCCAGCACCCAGCAACCTATCTGACACCTCGTCAAACATTGATATTGATTTTAATACAAATGAACAAGCCGGAGAAAGCAGTTCATGTATTGTCGTTGGAGATAATAGTACTGGGATATCTGGTGGACACTGTCTAGAAGGAACTATATGTGAGAGTTTTGATTGGCAAGAATCTATTACTGCCCATGCAGAAGGAAATCAGTTGCAGTGCTTGCAAATTGAATCAGTAGATGGGCAGTCATCATCAGTCAGTGTTGTATGTGAAAGAAGAGAAGACACTGGGCAAAATGTTGATGTGGTGGCAATCAGAGATGACACTGGTCAAAATGTTGATGTGGTGGCTATCAGAGATACAGCTAATGAACTTATCCAACAAAGCTTACAAATCCATGATTCAGAGCATAGCAGTAATCAGGAATCCAGCGAGGTGCACATTGGGCAATCTGAGCTGAGTGATATAAGTATCGATGAAAATGATTCATTGAATCACAATGGTTATTCCGAGGGCAATGTTGTCGATAATGTTAATTATGGGTCCAGTGCTCTAGAAGGACCTATGGAAGATATTGTTGAAACTGAAGGAAATGGCTGGCATCAGAGTAACACAGAATGGAGAAATAACACTGATGAAAGTGTGGATGATAATCAGCTCAGCAATACCGCAAATGAGTGGCCTGAAAACATTTGGGCAAATGAAGATGGAGAAAATCCTCGTCTGCCAGAAGCTTCTGAAGTGTGGCAAGAGGATGGTGGCTTCCAAGAAGCGGTGGAAAATTGGTTGGGAGGACCTTCTAACAATGAAACTGCTCCAGGTGTTAGAGTTAATAATTTTTATTTTCCTGATGATGACAATGTATACAGTGTTGAACTCAGGGAGCTTCACAATAGGAGACGCGTCTCTAATCTTCTCGGCAGTAGTTTCCGTGAGAGTCTTGACCAGTTGATACAATCATATGTTGAAAGACAAGGTCATGCTAACATGGAGTGGGATATGGAAGAAGCAACCCCTTCTGCTGCTTTAGTAGAACAGAACCTCGAGCATCAGAGGGGAGATCAGATTGTTGATCAAGAGACTACTATTAATAATTCACCTGACTTGCCCTCTTTGCATACACCGCCTACTCCACCTCTTTGGGATCAGCATCCTCATGATGATAACTGGCCACACAATGATGATTTGGAGATGATTAATGACTTGAGACTTGACATGGCTAGATTACATCAAAGAATGAATAGTATGCAGAAGATGTTGGAGACATGTATGGATATGCAGCTTGAATTGCAGCGTTCAATAAGACAAGAAGTTTCTGCAGCCCTAAATCGCTCAGGTGATTCACCAGGAATACATGAGTGCGATTCACCAGTTGACAGTTCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATTTGCGGCGAAGGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGCACATGTTCAAAATGTGCCAATGAGTTGCTTCAAAGTAGAAGGAAATGCCCAATGTGTCAAGCCCCTGTTTTGGAGGTGATACGAACTTATTCTATACTATAA	2532	0.4325	MAIAGLHSVSMLDSSLLRDSQSQASRRRGDGRRGSTRSSSLLHMWREIEDEHAVSQVQGSNGLIADLSLEDTPDSPEIGRRHGLDDAVFGENESETWSQSQSQNESHDGHEDLNNSSCENSSVFGEVERERVRRIFREWMNSGSRDCGSTISRRSSSPRREWLGETEQERVRVIREWVQMSSQQRNVSSGENREQPCAEIGTQIERVRDGFVVNSGGGQSEHILRGMRKIRGRQVMLDMLKKAERERQREIQELLDHQAVSRFPHRNRIQALLRGRFLRNDRSTDHNRSTSVAESELGLLRRKQTVSGLREGFFSRMDSTGSSPAPSNLSDTSSNIDIDFNTNEQAGESSSCIVVGDNSTGISGGHCLEGTICESFDWQESITAHAEGNQLQCLQIESVDGQSSSVSVVCERREDTGQNVDVVAIRDDTGQNVDVVAIRDTANELIQQSLQIHDSEHSSNQESSEVHIGQSELSDISIDENDSLNHNGYSEGNVVDNVNYGSSALEGPMEDIVETEGNGWHQSNTEWRNNTDESVDDNQLSNTANEWPENIWANEDGENPRLPEASEVWQEDGGFQEAVENWLGGPSNNETAPGVRVNNFYFPDDDNVYSVELRELHNRRRVSNLLGSSFRESLDQLIQSYVERQGHANMEWDMEEATPSAALVEQNLEHQRGDQIVDQETTINNSPDLPSLHTPPTPPLWDQHPHDDNWPHNDDLEMINDLRLDMARLHQRMNSMQKMLETCMDMQLELQRSIRQEVSAALNRSGDSPGIHECDSPVDSSKWECVRKGLCCICGEGNIDSLLYRCGHLCTCSKCANELLQSRRKCPMCQAPVLEVIRTYSIL	843

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi282g00010	843	CDD	mRING-HC-C3HC5_NEU1	791	840	-	-
	Vivi282g00010	843	MobiDBLite	consensus disorder prediction	315	334	-	-
	Vivi282g00010	843	SUPERFAMILY	RING/U-box	790	837	-	-
	Vivi282g00010	843	Coils	Coil	233	260	-	-
	Vivi282g00010	843	Coils	Coil	719	739	-	-
	Vivi282g00010	843	ProSiteProfiles	Zinc finger RING-type profile.	791	830	IPR001841	-
	Vivi282g00010	843	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	442	843	-	-
	Vivi282g00010	843	MobiDBLite	consensus disorder prediction	316	334	-	-
	Vivi282g00010	843	MobiDBLite	consensus disorder prediction	15	41	-	-
	Vivi282g00010	843	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	779	841	IPR013083	-
	Vivi282g00010	843	Pfam	Zinc finger, C3HC4 type (RING finger)	788	835	-	-
	Vivi282g00010	843	MobiDBLite	consensus disorder prediction	91	124	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi282g00010	791	837	C3H Transcription Factor Family	AT3G06140	42.553	2.06e-06	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi282g00010	-		-	gmx:100801329	1062.75