Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi282g00008 ATGGCTATTGCTGGTTTGCACAGTGTGTCGATGCTGGATTCTTCTTTATTGAGGGACTCGCAGTCTCAGGCGTCTAGGAGGAGGGGAGATGGAAGAAGGGGTAGCACTCGGTCGTCTTCACTTTTGCACATGTGGCGAGAGATTGAGGATGAACATGCAGTGAGTCAAGTTCAAGGTAGCAATGGGTTGATTGCGGATCTTTCTTTAGAAGATACCCCTGATAGCCCAGAGATAGGACGGAGGCATGGTTTGGACGATGCTGTTTTTGGTGAGAATGAGTCGGAAACATGGTCACAGTCACAAAGTCAGAATGAATCACATGATGGTCATGAGGATTTAAACAATTCTAGCTGTGAAAATTCTTCTGTTTTTGGAGAAGTTGAAAGGGAAAGAGTGAGACGAATTTTCAGGGAATGGATGAATAGTGGATCTAGGGATTGTGGATCAACTATTTCCCGAAGAAGTAGCAGTCCAAGGAGAGAATGGCTTGGAGAAACTGAACAGGAAAGAGTGAGAGTTATAAGGGAGTGGGTACAAATGAGCAGCCAGCAGAGAAACGTTTCTTCTGGGGAAAACAGGGAACAGCCATGTGCTGAAATTGGTACACAAATTGAACGTGTGCGTGATGGATTTGTGGTTAATAGTGGTGGTGGCCAAAGTGAACATATACTGAGGGGTATGCGGAAAATACGTGGCAGGCAGGTTATGCTAGATATGCTTAAGAAGGCCGAGAGGGAAAGGCAGAGGGAAATTCAGGAGTTGCTGGACCATCAGGCTGTATCTCGTTTTCCCCATCGCAATCGCATTCAGGCATTGCTTAGAGGCAGGTTCTTGAGAAACGATAGATCCACTGATCATAACAGGTCCACATCTGTAGCAGAAAGTGAATTAGGCCTATTAAGGCGAAAGCAAACTGTATCAGGTCTAAGGGAAGGGTTCTTCTCTAGAATGGACAGTACAGGTTCCAGTCCAGCACCCAGCAACCTATCTGACACCTCGTCAAACATTGATATTGATTTTAATACAAATGAACAAGCCGGAGAAAGCAGTTCATGTATTGTCGTTGGAGATAATAGTACTGGGATATCTGGTGGACACTGTCTAGAAGGAACTATATGTGAGAGTTTTGATTGGCAAGAATCTATTACTGCCCATGCAGAAGGAAATCAGTTGCAGTGCTTGCAAATTGAATCAGTAGATGGGCAGTCATCATCAGTCAGTGTTGTATGTGAAAGAAGAGAAGACACTGGGCAAAATGTTGATGTGGTGGCAATCAGAGATGACACTGGTCAAAATGTTGATGTGGTGGCTATCAGAGATACAGCTAATGAACTTATCCAACAAAGCTTACAAATCCATGATTCAGAGCATAGCAGTAATCAGGAATCCAGCGAGGTGCACATTGGGCAATCTGAGCTGAGTGATATAAGTATCGATGAAAATGATTCATTGAATCACAATGGTTATTCCGAGGGCAATGTTGTCGATAATGTTAATTATGGGTCCAGTGCTCTAGAAGGACCTATGGAAGATATTGTTGAAACTGAAGGAAATGGCTGGCATCAGAGTAACACAGAATGGAGAAATAACACTGATGAAAGTGTGGATGATAATCAGCTCAGCAATACCGCAAATGAGTGGCCTGAAAACATTTGGGCAAATGAAGATGGAGAAAATCCTCGTCTGCCAGAAGCTTCTGAAGTGTGGCAAGAGGATGGTGGCTTCCAAGAAGCGGTGGAAAATTGGTTGGGAGGACCTTCTAACAATGAAACTGCTCCAGGTGTTAGAGTTAATAATTTTTATTTTCCTGATGATGACAATGTATACAGTGTTGAACTCAGGGAGCTTCACAATAGGAGACGCGTCTCTAATCTTCTCGGCAGTAGTTTCCGTGAGAGTCTTGACCAGTTGATACAATCATATGTTGAAAGACAAGGTCATGCTAACATGGAGTGGGATATGGAAGAAGCAACCCCTTCTGCTGCTTTAGTAGAACAGAACCTCGAGCATCAGAGGGGAGATCAGATTGTTGATCAAGAGACTACTATTAATAATTCACCTGACTTGCCCTCTTTGCATACACCGCCTACTCCACCTCTTTGGGATCAGCATCCTCATGATGATAACTGGCCACACAATGATGATTTGGAGATGATTAATGACTTGAGACTTGACATGGCTAGATTACATCAAAGAATGAATAGTATGCAGAAGATGTTGGAGACATGTATGGATATGCAGCTTGAATTGCAGCGTTCAATAAGACAAGAAGTTTCTGCAGCCCTAAATCGCTCAGGAATACATGAGTGCGATTCACCAGTTGACAGTTCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATTTGCGGCGAAGGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGCACATGTTCAAAATGTGCCAATGAGTTGCTTCAAAGTAGAAGGAAATGCCCAATGTGTCAAGCCCCTGTTTTGGAGGTGATACGAACTTATTCTATACTATAA 2520 0.4321 MAIAGLHSVSMLDSSLLRDSQSQASRRRGDGRRGSTRSSSLLHMWREIEDEHAVSQVQGSNGLIADLSLEDTPDSPEIGRRHGLDDAVFGENESETWSQSQSQNESHDGHEDLNNSSCENSSVFGEVERERVRRIFREWMNSGSRDCGSTISRRSSSPRREWLGETEQERVRVIREWVQMSSQQRNVSSGENREQPCAEIGTQIERVRDGFVVNSGGGQSEHILRGMRKIRGRQVMLDMLKKAERERQREIQELLDHQAVSRFPHRNRIQALLRGRFLRNDRSTDHNRSTSVAESELGLLRRKQTVSGLREGFFSRMDSTGSSPAPSNLSDTSSNIDIDFNTNEQAGESSSCIVVGDNSTGISGGHCLEGTICESFDWQESITAHAEGNQLQCLQIESVDGQSSSVSVVCERREDTGQNVDVVAIRDDTGQNVDVVAIRDTANELIQQSLQIHDSEHSSNQESSEVHIGQSELSDISIDENDSLNHNGYSEGNVVDNVNYGSSALEGPMEDIVETEGNGWHQSNTEWRNNTDESVDDNQLSNTANEWPENIWANEDGENPRLPEASEVWQEDGGFQEAVENWLGGPSNNETAPGVRVNNFYFPDDDNVYSVELRELHNRRRVSNLLGSSFRESLDQLIQSYVERQGHANMEWDMEEATPSAALVEQNLEHQRGDQIVDQETTINNSPDLPSLHTPPTPPLWDQHPHDDNWPHNDDLEMINDLRLDMARLHQRMNSMQKMLETCMDMQLELQRSIRQEVSAALNRSGIHECDSPVDSSKWECVRKGLCCICGEGNIDSLLYRCGHLCTCSKCANELLQSRRKCPMCQAPVLEVIRTYSIL 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi282g00008 839 CDD mRING-HC-C3HC5_NEU1 787 836 - -
Vivi282g00008 839 MobiDBLite consensus disorder prediction 315 334 - -
Vivi282g00008 839 Coils Coil 233 260 - -
Vivi282g00008 839 Coils Coil 719 739 - -
Vivi282g00008 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 775 837 IPR013083 -
Vivi282g00008 839 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 839 - -
Vivi282g00008 839 MobiDBLite consensus disorder prediction 316 334 - -
Vivi282g00008 839 MobiDBLite consensus disorder prediction 15 41 - -
Vivi282g00008 839 Pfam Zinc finger, C3HC4 type (RING finger) 784 831 - -
Vivi282g00008 839 SUPERFAMILY RING/U-box 786 833 - -
Vivi282g00008 839 ProSiteProfiles Zinc finger RING-type profile. 787 826 IPR001841 -
Vivi282g00008 839 MobiDBLite consensus disorder prediction 91 124 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi282g00008 787 833 C3H Transcription Factor Family AT3G06140 42.553 2.08e-06 48.9