Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi282g00007 ATGAGATTCTCCAACCGCAGGTTGCTCCTACAGTACGAGGATGTTCCAATCTCAACACCTCCTCAAATCCAACCCACCAACTCCAAAGCATCCTCACCCTCCATTCCAACCATTCCATCAAAAACCATCACAAGCCCTTTGAGTCTACCACTACCGTTACATCCGATTTTCTCTTCCAACGTAGCCTACTCCTTCCTCCTCATCTTCTCCATCTTCTTCTTCGCGGCCTTCGTCATCTTGTCCATCCGTGAAGTCTCGTCCCGGCGGCGGCGTGGCATCCCTCCGCGACGGGGGCTGGATCCCGCCGCCGTGAAGGCTCTGCCGGTTTGTTTGTACGAGGAGGATACGAAGCAGCCGGACTGTGCGATTTGTTTGGAGGAGTTTCGAGAGTGTGAGGAAGTGAAGATGGTTCCGTACTGTTCGCACGTGTTTCATCCGGAATGTATTGACGCGTGGCTTTCTGCGCACGTGACTTGTCCTATTTGCAGGTGCGTTATTAAAGTGTGCGGTGGGAGTGTCGATCAAAATGCTGGAAGATCAACGGTGGAGAATGGAAGTTGA 561 0.5241 MRFSNRRLLLQYEDVPISTPPQIQPTNSKASSPSIPTIPSKTITSPLSLPLPLHPIFSSNVAYSFLLIFSIFFFAAFVILSIREVSSRRRRGIPPRRGLDPAAVKALPVCLYEEDTKQPDCAICLEEFRECEEVKMVPYCSHVFHPECIDAWLSAHVTCPICRCVIKVCGGSVDQNAGRSTVENGS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi282g00007 186 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Vivi282g00007 186 FunFam E3 ubiquitin-protein ligase ATL6 84 168 - -
Vivi282g00007 186 PANTHER RING FINGER DOMAIN-CONTAINING 43 166 - -
Vivi282g00007 186 Pfam Ring finger domain 120 163 IPR001841 -
Vivi282g00007 186 SUPERFAMILY RING/U-box 107 168 - -
Vivi282g00007 186 SMART ring_2 121 162 IPR001841 -
Vivi282g00007 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 168 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi282g00007 96 163 C3H Transcription Factor Family AT2G27940 57.143 3.69e-24 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi282g00007 - K10664 mtr:25492360 217.624