Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi282g00004 ATGCTCCCTATCCTAAATATCGCCGACGATGTTGTTCTCGTCGAACACCTGTCTCCGCGGATTGGGAAAGTTGGTCACAGTGACTTAGTTCTTGTGACGTCACATTTGAACCCTAATCGGAACTTGACAAAGCGTGTTGTTGCTATGGAAGGGGATACTGTTACTTTCTTTGATGCTTCAGGTTTTGTTTCCTCTAGAACTGATGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGAGATAACATATATGCTTCCTTTGATTCACGTCACTTTGGTCCTGTTCCATATGGCCTTATAAAAGGAAAAGTGTTTTTTTGGATGTGA 324 0.429 MLPILNIADDVVLVEHLSPRIGKVGHSDLVLVTSHLNPNRNLTKRVVAMEGDTVTFFDASGFVSSRTDVVPKGHVWIQGDNIYASFDSRHFGPVPYGLIKGKVFFWM 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi282g00004 107 PRINTS Bacterial leader peptidase 1 (S26A) family signature 70 89 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vivi282g00004 107 PRINTS Bacterial leader peptidase 1 (S26A) family signature 42 54 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vivi282g00004 107 SUPERFAMILY LexA/Signal peptidase 1 106 IPR036286 -
Vivi282g00004 107 Gene3D Umud Fragment, subunit A 1 107 - -
Vivi282g00004 107 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 1 105 - -
Vivi282g00004 107 Pfam Signal peptidase, peptidase S26 8 58 IPR019533 GO:0004252|GO:0006465
Vivi282g00004 107 Pfam Signal peptidase, peptidase S26 66 105 IPR019533 GO:0004252|GO:0006465
Vivi282g00004 107 CDD S26_SPase_I 1 103 IPR019533 GO:0004252|GO:0006465
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi282g00004 1 105 MADS-box Gene Family AT1G29960 46.226 7.32e-28 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi282g00004 K09647 - gmx:100527597 159.458