Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi281g00001 ATGAGGGGAAGAAGCTACAGTTACAGTCCGTCACCTCCAAGGTACGGTCGAAGGGAACGCAGTCCTAGTCCTAGGGGGCGTTACGGAGGAGGCCGTTACAGAGGCCGGGATAGAGATTTGCCAACAAGTCTTCTGGTTCGGAATCTCCACAAAGATTGCAGGCCGGAAGATCTGCACGATCCATTTGGCCAGTTTGGTCCTGTCAAGGATGTATACCTGCCTCGTGATTATTACACTGGGGAGCCAAGGGGATTTGGGTTTGTTCAGTTTGTGGATCCAGCTGATGCTGCAGATGCAAAATATCACATGGATGGTCAAATTCTTCTTGGTCGTGAGTTAACTGTGGTGTTTGCCGAAGAAAACAGGAAGAAACCTCAAGAAATGAGAGCAAGAGAACGAGGAAGGTCATATGACTATAGGAGATCTCCGCGTCGCCGATCTCCTTCACCACGCTATGCACGGACATATTCTCCTAGTCCAGACTATTCCCCTTCTCCAAGACAAAGGCGATACTCCAGATATTCCAGGTCAATTTCACCAAGAGATGGGAGGTATAGAAGGGGATCATACTCCCCATCCCCTTATGCATCAAGAAGCCCCAGACGAAGTAGGAGTTACAGCAGAAGCATAAGTCCAGGATACTCTAGATGA 651 0.49 MRGRSYSYSPSPPRYGRRERSPSPRGRYGGGRYRGRDRDLPTSLLVRNLHKDCRPEDLHDPFGQFGPVKDVYLPRDYYTGEPRGFGFVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPQEMRARERGRSYDYRRSPRRRSPSPRYARTYSPSPDYSPSPRQRRYSRYSRSISPRDGRYRRGSYSPSPYASRSPRRSRSYSRSISPGYSR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi281g00001 216 Gene3D - 36 207 IPR012677 -
Vivi281g00001 216 SMART rrm1_1 43 116 IPR000504 GO:0003723
Vivi281g00001 216 MobiDBLite consensus disorder prediction 122 216 - -
Vivi281g00001 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Vivi281g00001 216 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 41 206 - -
Vivi281g00001 216 SUPERFAMILY RNA-binding domain, RBD 42 147 IPR035979 GO:0003676
Vivi281g00001 216 MobiDBLite consensus disorder prediction 152 173 - -
Vivi281g00001 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 113 IPR000504 GO:0003723
Vivi281g00001 216 MobiDBLite consensus disorder prediction 1 39 - -
Vivi281g00001 216 MobiDBLite consensus disorder prediction 122 145 - -
Vivi281g00001 216 MobiDBLite consensus disorder prediction 192 216 - -
Vivi281g00001 216 MobiDBLite consensus disorder prediction 18 39 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi281g00001 42 159 Eukaryotic Initiation Factors Gene Family AT4G34110 27.119 8.04e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi281g00001 K12900 - gmx:100816913 201.06