Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi280g00010 ATGGCATCCGAATCCTCTAGCATCTCAGTCACTTCACAAAATCATGGTGATTCTTCCAAGAAGGAGATTGAACAAGGTCAATCTTCAAAATCTGATTCCAACATGCCTATTGATTTTGTGAAGCTGTCGAAAGATGATTCGGTTGACGGGTCAAAGGTGCAAGCGCACAATTTTTTTAGCCATATTCAAGTTGGTGGTTCGTCATCTCATTCTCCTAATACTGAAAATGAAATTAAAGGCGAGAAAACAACTGAAGAGAAGAATTCGGCGTCAAAGGTATCTTATGCATGCAAATTTTGCAAGAGAGAATTCCCCACTTTACAAGCGTTGGGAGGGCACCAGAACGCCCATAAGGCAGAACGTGCTTTAGAAAGGCAACGTGAACAAAGGTATATAAATAATGCTTTAGGGTTAGGGCAAACTCACTTGAACCCTACTTACTTTCGTTATCCTAGTTCTCATTCACCTTATGGATCACTCGGGGTTAGAATGGATTCGAGGATTCAAAAACCATCTTTTTATAGCCCTAGGGTTACACCAAATAATTTTGCGTATAGTCATGGTGGTGCTGGTGGTGTGTGTTTGAGAAATAGTATGGAAGGCAGTAGCAGGGTTGGAGTTCAAGGTCTTAGTGGTGCAACTTCTTCAAGGACTGAAAATGGTGCAAATAATAAAATTGCTGCTTTTCTAAAACTTGGAGAGTCTTCTAAAGATGTTGGCACAAGCTCAAACTCAATCATAGAGAAGAATTTCTTTGTGGATGCTGCTCCTATCAAAGATGAAACACCAAAGTTCAACACTGAAGATGAACCTTCAGATTCTGAATCTTCAGGGCTTGATTTGACACTTAAGCTTTGA 858 0.4021 MASESSSISVTSQNHGDSSKKEIEQGQSSKSDSNMPIDFVKLSKDDSVDGSKVQAHNFFSHIQVGGSSSHSPNTENEIKGEKTTEEKNSASKVSYACKFCKREFPTLQALGGHQNAHKAERALERQREQRYINNALGLGQTHLNPTYFRYPSSHSPYGSLGVRMDSRIQKPSFYSPRVTPNNFAYSHGGAGGVCLRNSMEGSSRVGVQGLSGATSSRTENGANNKIAAFLKLGESSKDVGTSSNSIIEKNFFVDAAPIKDETPKFNTEDEPSDSESSGLDLTLKL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi280g00010 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Vivi280g00010 285 MobiDBLite consensus disorder prediction 261 285 - -
Vivi280g00010 285 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Vivi280g00010 285 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 3 285 IPR044246 GO:0009788
Vivi280g00010 285 MobiDBLite consensus disorder prediction 1 43 - -
Vivi280g00010 285 MobiDBLite consensus disorder prediction 1 16 - -
Vivi280g00010 285 SUPERFAMILY beta-beta-alpha zinc fingers 93 123 IPR036236 -
Vivi280g00010 285 Gene3D Classic Zinc Finger 67 140 - -
Vivi280g00010 285 Pfam C2H2-type zinc finger 95 119 - -
Vivi280g00010 285 MobiDBLite consensus disorder prediction 62 87 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi280g00010 87 193 C2H2 Transcription Factor Family AT5G01860 42.056 2.15e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi280g00010 zf-C2H2_6 1.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi280g00010 - - tpra:123915384 255.373