Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi280g00008 ATGGCATCCGAATCCTCTAGCCCCTCAGTCACTTCACAAAATCATGGTGATTCTTCCAAAACACAAAACATGGTGGACAAGAAGGAGATTGAACAAGGTCAATCTTCAAAATCTAATTCCATCATGCCTATTAATTTTGTGAAGCTATCGAAAGAGGCTTCGGTTGACGGGTCAAAGGTGCAAGCGCACAATTTGTTTAGCCATATTCAAGTTGGCGGTTCCTCGTCTCATTCTCCTAATACAGACAATGAAAAGAAAGGAGAGAAAACCATTGAAGGGAAGAATTCGGCATCAAAGGTATCATATGCTTGTAAGTTTTGCAAGAGAGAATTTCCTACCTTACAAGCGTTGGGAGGGCACCAGAACGCCCATAAGGCAGAACGTGCTTTAGAAAATCAACGTGAACAAAGGTACATAAATAATGCTTTAGGGTTAGGGCAAATTCACTTGAACCCTACTTACTTTTGTTATCCTAGTTCAAATTCACCTTATGGATCACTCGGGGTTAGAATGGATTCAATGATTCAAAAACCATCCTTTTTTAGCCCTAGGGTTACACCAAATAATTTGGCATATAGTCATGGTGGTGTTGGTGGTGTGTGTTTGAGAAATAGTATGGAAGGAAGTAGTAGGGTTGGAATTCTTGGTGGTGCAACTTCTACTAGGATTGAAAATGGTGCAAATAATAAAATTGCCGCTTTTCTAAAACTTGGAGAGTCTTCAAAAGATGTTGCCACAAATTCAAACTCAATCATAGAAAGGAATTTTTTTGTGGCTCCTGCTCCTGTCAAAGATGATATACATCAACCAAAGCTCAGCACTGAAGATGAAACTTTAGATTCTGAATCTTCAGGGCTTGATTTGACACTTAAGCTTTGA 879 0.3936 MASESSSPSVTSQNHGDSSKTQNMVDKKEIEQGQSSKSNSIMPINFVKLSKEASVDGSKVQAHNLFSHIQVGGSSSHSPNTDNEKKGEKTIEGKNSASKVSYACKFCKREFPTLQALGGHQNAHKAERALENQREQRYINNALGLGQIHLNPTYFCYPSSNSPYGSLGVRMDSMIQKPSFFSPRVTPNNLAYSHGGVGGVCLRNSMEGSSRVGILGGATSTRIENGANNKIAAFLKLGESSKDVATNSNSIIERNFFVAPAPVKDDIHQPKLSTEDETLDSESSGLDLTLKL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi280g00008 292 Gene3D Classic Zinc Finger 75 144 - -
Vivi280g00008 292 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 3 292 IPR044246 GO:0009788
Vivi280g00008 292 MobiDBLite consensus disorder prediction 1 20 - -
Vivi280g00008 292 MobiDBLite consensus disorder prediction 69 94 - -
Vivi280g00008 292 SUPERFAMILY beta-beta-alpha zinc fingers 100 130 IPR036236 -
Vivi280g00008 292 MobiDBLite consensus disorder prediction 271 292 - -
Vivi280g00008 292 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Vivi280g00008 292 MobiDBLite consensus disorder prediction 1 39 - -
Vivi280g00008 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Vivi280g00008 292 Pfam C2H2-type zinc finger 102 126 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi280g00008 94 140 C2H2 Transcription Factor Family AT5G01860 57.447 2.55e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi280g00008 zf-C2H2_6 2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi280g00008 - - tpra:123915384 269.24