Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi280g00006 ATGGCATCCGAATTCTCAGTCACTTCACAAAATTATGGTGATTCTTCCAAACCAAAAAATCTGGTGGACATGAAGGAGTATGAACAAGGTCAGTCTTCAAAATCGGATTCCAACATGCCTATTGATTTTGTGAAGCTATTGAAAGAGGATTCGGTTGACGCGTCAAAGGTGCAAGAACACAATTTTTTTAGCCCTATTCAAGTTCGTGGTTCATGGTCTGATTCTCCTAAGGCTGATAATGAAAAGAAAAAAGAGAAAACCACTGGAGAGAAGAACTCGGAGTCCAAGACATCTTATTCATGCAACTTTTGCATGAGAGAATATCCAACTTTACAAGCTTTAGGAGGGCACCAGAACGCCCATAAAGCGGAACGTGCTTTACTAAAGCAGCACCAACAAATGTATGGTGCTTTAAGGTTGGGGCAAACTCACTTGAACCCTTATTTTTGTTATCCTAGAGCTCTTTATTCACCCTATGGATCACTCGGGGTTAGAATGAATTCAATGATTCAAAAACCATCTTTCTTTAGCCCTAGGGTTACACCACATAATTTTGCATATGGTCATGGTGGTATGTATTTGCAAGAGAGATTAAACCCTTCCCTTGTTAATTTGAGAAACAGTATGGAAGGTAGTAGCAGGGTTGGAATTCCAGGTCTTGGTGGTGCAACTTCTTCTAGAGTTGAAAATGATGCAAATAATAAAATTGCTGCTTTTCTAAAACTTGGAGAGTCTTCTAAAGATGTTGCCACAAGTTCAAACTCAATCATAGAGAAGAATTTTTTTATGGCTCCTGCTCCTGCCAAAGATGAAATTCATCAATCAAAGTTCAACACTGAAGATGAACCTTCCGATTCTGAATCTTCTGGGCTTGATTTGACCCTTAAGCTTTGA 894 0.3915 MASEFSVTSQNYGDSSKPKNLVDMKEYEQGQSSKSDSNMPIDFVKLLKEDSVDASKVQEHNFFSPIQVRGSWSDSPKADNEKKKEKTTGEKNSESKTSYSCNFCMREYPTLQALGGHQNAHKAERALLKQHQQMYGALRLGQTHLNPYFCYPRALYSPYGSLGVRMNSMIQKPSFFSPRVTPHNFAYGHGGMYLQERLNPSLVNLRNSMEGSSRVGIPGLGGATSSRVENDANNKIAAFLKLGESSKDVATSSNSIIEKNFFMAPAPAKDEIHQSKFNTEDEPSDSESSGLDLTLKL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi280g00006 297 MobiDBLite consensus disorder prediction 1 17 - -
Vivi280g00006 297 MobiDBLite consensus disorder prediction 272 297 - -
Vivi280g00006 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Vivi280g00006 297 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 297 IPR044246 GO:0009788
Vivi280g00006 297 MobiDBLite consensus disorder prediction 67 97 - -
Vivi280g00006 297 MobiDBLite consensus disorder prediction 1 39 - -
Vivi280g00006 297 MobiDBLite consensus disorder prediction 75 92 - -
Vivi280g00006 297 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi280g00006 89 176 C2H2 Transcription Factor Family AT5G10970 42.222 2.45e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi280g00006 - - tpra:123915384 286.574