Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi280g00002 ATGGCATCTGAATCCTCTAGCCTCTCAGTCACTTCACAAAATCATGGTGATTCTTCCGAAACAAAAAACATGGTGGACAAAAAGGAGCTTAAACAAGGTCAATCTTCAAATTCCGATTCCAACATGCCTATTGATTTTGTGAAGCTATTGAAAGAGGATTCGATTGACGGGTCAAAGGTGCAAGAGCACAATTTTTTTAGCCCTATTCAAGTTGGTGGTTCATCGTCCCATTTTCCACATACCGACGAAAAAACGAAGAAAGACGAGAAAACCATTGAAGAAAAAAATTCGGAGTCAAAGACATCTTACTCATGTAATTTTTGCAAAAGAGAATTTTCTACTTTACAAGCGTTGGGAGGGCATCAGAACGCCCATAAGGCAGAACGTGCTTTACAAAAGCAACGTGAACAAAGGTACGAAAATGATGCTTTAGGGTTAGGACAAACACACTTGAACCCTTATTTTCGTTATCCTAGTGCTCTTTATTCACCTTATGGATCACTTGGTGTTCGAATGGACTCCATGATTCAAAAACCATCTTTTTTTAATCCAAGGGTTACAACAAATAATTTTTCATATGGTCATGGTGGTGTGTGTTTGCAAGAGACATTAAACCCTTTTCTTGTTAGTTTGAGAAATAATATGGAAGGTAGTAGCAGGATTGGCCTTCTAGGTCTTGGTGGTGCAACTTCTTCTAAGATTGAAAATGGTGCAACTAATAAAATTGCTGCTTTTCTAAAATTTGGAGAGTCTTCTAAAGATGTTGCCACAAGTTCAAACTCAATCATAGAGAAGAATTTTTTTGTGGCTCCTGCTCCTATCAAAGATGAAATTCATCAACCAAAGTTCAACATTGAAGAAGAACCTTCCGATTCCGAATCTTCTGGGCTTGATTTAACACTTAAGCTTTGA 912 0.3772 MASESSSLSVTSQNHGDSSETKNMVDKKELKQGQSSNSDSNMPIDFVKLLKEDSIDGSKVQEHNFFSPIQVGGSSSHFPHTDEKTKKDEKTIEEKNSESKTSYSCNFCKREFSTLQALGGHQNAHKAERALQKQREQRYENDALGLGQTHLNPYFRYPSALYSPYGSLGVRMDSMIQKPSFFNPRVTTNNFSYGHGGVCLQETLNPFLVSLRNNMEGSSRIGLLGLGGATSSKIENGATNKIAAFLKFGESSKDVATSSNSIIEKNFFVAPAPIKDEIHQPKFNIEEEPSDSESSGLDLTLKL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi280g00002 303 MobiDBLite consensus disorder prediction 279 303 - -
Vivi280g00002 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Vivi280g00002 303 MobiDBLite consensus disorder prediction 68 96 - -
Vivi280g00002 303 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Vivi280g00002 303 MobiDBLite consensus disorder prediction 1 44 - -
Vivi280g00002 303 MobiDBLite consensus disorder prediction 79 96 - -
Vivi280g00002 303 Pfam C2H2-type zinc finger 103 127 - -
Vivi280g00002 303 Gene3D Classic Zinc Finger 80 147 - -
Vivi280g00002 303 MobiDBLite consensus disorder prediction 1 19 - -
Vivi280g00002 303 SUPERFAMILY beta-beta-alpha zinc fingers 100 131 IPR036236 -
Vivi280g00002 303 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 3 303 IPR044246 GO:0009788
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi280g00002 97 195 C2H2 Transcription Factor Family AT5G27880 39.655 2.63e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi280g00002 zf-C2H2_6 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi280g00002 - - tpra:123915384 336.265