Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi277g00013 ATGTCCTCTCCTCACAGTTACTTCACCAACCTTGGCCTTGGCTACTCCATAGCCATAACCCTCGCTTTCCTCGTCCTCCTCGCCACTCTCTTCCTCTCTTTCTACCTATGTTGCCGCACCAGCCACAACAACAACAACAACCCCAACAACAATAATCCCAACAACTACACTGAAGGTATCGTTTTGTCACGTGACATCTTCATATCTGAAACCGATGAAGAAAACCAACTCGCAGAAGAAAACACCGTAGTCGGTCTAGAAGACAACGTGATAAACTCCTATCCGAGGTTTCAATTCAACCGAGACAACGCAACAGTCTTAGGACAAAACACAACGTGTTCTATTTGTTTGTGTGAGTACAAGGATTCAGAGATGATGAGAATGATGCCGGAGTGTCGTCATTATTTTCATCTCTGCTGTCTTGATTCGTGGTTGAAGCTTAACGGTTCTTGTCCGGTTTGTCGGAACTCCCCGCTTCCAACGCCGTTGGCTACTCCGCTTCAAGAGGTTGTTCCGCTTTCTCAGTACGGTGCTGATCGGAGACGAAGAAGGTGA 555 0.4703 MSSPHSYFTNLGLGYSIAITLAFLVLLATLFLSFYLCCRTSHNNNNNPNNNNPNNYTEGIVLSRDIFISETDEENQLAEENTVVGLEDNVINSYPRFQFNRDNATVLGQNTTCSICLCEYKDSEMMRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLATPLQEVVPLSQYGADRRRRR 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi277g00013 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 159 IPR013083 -
Vivi277g00013 184 PANTHER RING-H2 FINGER PROTEIN ATL67 5 183 IPR044289 GO:0016567|GO:0016740
Vivi277g00013 184 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Vivi277g00013 184 SUPERFAMILY RING/U-box 112 160 - -
Vivi277g00013 184 Pfam Ring finger domain 112 155 IPR001841 -
Vivi277g00013 184 SMART ring_2 113 154 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi277g00013 1 174 C3H Transcription Factor Family AT5G07040 37.931 2.26e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi277g00013 - - rcu:125370724 244.973