Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi276g00054 ATGTCGGAAGCACCGTCTCAGCCACCACTCCCCTCCTCCGAGACACCTCCTCCTTACTGGTGCTACCACTGCGACAAACACGTCTCCGTTGAAACGGTCGCTAATGTCCCCGACGTCATCTGCGGCGATTGCAAAAACGGTTTCGTCGAATCCATCCCCACACCTTCTCGAACTCGCTCACCGTCCTCTTCCTCCGATGATCCTTACTTTGGTTCCCAATTTCTTCAGGTTCTTCGCCTAATCGCTGAATCGTCGCGTGAAGACGACGTGTCTCCTCCCCCTCCTCCGAGTCGTTCTCCGGAAGAGGATTTTCTTAGGATCGAACTCAGTGGTTGGAACCACAACGAGGAAGATGACGATGATGCGTTTCACACCGACGGTGAAGATGATGAAGGTAGCGTCGAGGAGGTGGAAGATCGACCTGGCAACGAGGATCCGAATATGGACGATGAAGATATGAGACGAAGGAGACGCGATCTGTTACGGCATCGGATTAGGGATTTGGCGACGCGGACTCGAAGTATGCAGAATCGGATCTTGGATTGGGCCGAGATTTTGATGGGATTGGAAGATAATTCGATTGAATTTCGTCTTCAGGGACCGGAATCGGAGCGGTATGTTGGAAATCCAGAGGATTACGTTGACGCGGCGGATTATGAAGCGTTGCTGCAGACGCTGGCGGAGAGTGATGGAAGTGGGAGGAGAGGAGCTCCGCCGGCGTCAAAGTCTGCTGTGGAAGGTTTACCGACGGTTAAGATTGCGTCGGAGAGTGAAGTGGTTGCTTGTGCTGTGTGTAAGGATATGCTTGGTGTTGGAGACATGGCGAAGAGATTGCCGTGTGGGCATGAGTATCATGGAGATTGCATTGTTCCGTGGTTGAGTAGTAGAAATTCTTGTCCTGTTTGCAGGTTTGAGCTTCCAACAGATGATAAAGAGTATGAAGAAGAGAGAGCTTCGGGTTCGGGGCGCGGTGGAGCTTCCGCCGTGTGA 990 0.5242 MSEAPSQPPLPSSETPPPYWCYHCDKHVSVETVANVPDVICGDCKNGFVESIPTPSRTRSPSSSSDDPYFGSQFLQVLRLIAESSREDDVSPPPPPSRSPEEDFLRIELSGWNHNEEDDDDAFHTDGEDDEGSVEEVEDRPGNEDPNMDDEDMRRRRRDLLRHRIRDLATRTRSMQNRILDWAEILMGLEDNSIEFRLQGPESERYVGNPEDYVDAADYEALLQTLAESDGSGRRGAPPASKSAVEGLPTVKIASESEVVACAVCKDMLGVGDMAKRLPCGHEYHGDCIVPWLSSRNSCPVCRFELPTDDKEYEEERASGSGRGGASAV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi276g00054 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 309 IPR013083 -
Vivi276g00054 329 MobiDBLite consensus disorder prediction 45 71 - -
Vivi276g00054 329 MobiDBLite consensus disorder prediction 114 155 - -
Vivi276g00054 329 Pfam zinc-ribbon 19 52 IPR039525 GO:0061630
Vivi276g00054 329 SMART ring_2 262 302 IPR001841 -
Vivi276g00054 329 ProSiteProfiles Zinc finger RING-type profile. 262 303 IPR001841 -
Vivi276g00054 329 MobiDBLite consensus disorder prediction 51 71 - -
Vivi276g00054 329 SUPERFAMILY RING/U-box 257 309 - -
Vivi276g00054 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 139 307 - -
Vivi276g00054 329 MobiDBLite consensus disorder prediction 121 146 - -
Vivi276g00054 329 Pfam Zinc finger, C3HC4 type (RING finger) 262 302 - -
Vivi276g00054 329 FunFam E3 ubiquitin-protein ligase RING1-like 225 309 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi276g00054 173 315 C3H Transcription Factor Family AT5G01980 48.667 6.70e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi276g00054 - - gmx:100802200 464.536