Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi276g00015 | ATGGGGTCACCTCCTCCACTCCAAGAGCATATTCCTATCTCGGCGTTTTTGATAGCAATTGGCGTGCTTACAGCCTTTTTTATTATTTTGGTTATTTTTGCTCGACTTTTTAGGCTTCGTCAACGACAAGCCGTTGCTCGGATAATCCGAGAGAGAGTCAGTGAGTCAACATTTGACTCATCTGCCTCTCCACACGCACAAATTCAATGTGCGATTTGTGTCTACGAGTTTAAAACCGGAGACACACTTCATAGTTTGCCATGCGGACATGCACTTCATAAGCAATGCATGTTCGATTTTATTTTAAAATCTGCTCATGTTTGCCCAAATTGTAGGGCAACATTTTGA | 348 | 0.4224 | MGSPPPLQEHIPISAFLIAIGVLTAFFIILVIFARLFRLRQRQAVARIIRERVSESTFDSSASPHAQIQCAICVYEFKTGDTLHSLPCGHALHKQCMFDFILKSAHVCPNCRATF | 115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi276g00015 | 115 | SMART | ring_2 | 70 | 111 | IPR001841 | - | |
| Vivi276g00015 | 115 | PANTHER | - | 22 | 113 | - | - | |
| Vivi276g00015 | 115 | SUPERFAMILY | RING/U-box | 69 | 115 | - | - | |
| Vivi276g00015 | 115 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 115 | IPR013083 | - | |
| Vivi276g00015 | 115 | ProSiteProfiles | Zinc finger RING-type profile. | 70 | 112 | IPR001841 | - | |
| Vivi276g00015 | 115 | Pfam | Ring finger domain | 69 | 112 | IPR001841 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi276g00015 | 47 | 112 | C3H Transcription Factor Family | AT1G21960 | 31.343 | 7.45e-09 | 49.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi276g00015 | - | - | vvo:131628094 | 236.498 |