Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi276g00001 ATGGGATTGGGAGGTAGCAAATGCGGTGCCCTAAATGACACCGCTTGTTCTTCTCCGGAGGAAACAACCACAGCCCTAACATCACTGTCTCTCAGCAATTCCCTTCACGCGCCACCTCTTTCATTCGATCTGATCGAAGAAATACTGTGTCGACTATCCGTGAAACACCTCCTTCAACTCCGCTGCGTCTGCAAATCATGGAATTCTCTTATCTCCCGGGATTCCAACTTCGCCAACAAGCAACTCCGCTTGTCAACCTCTAACCATGAACGCCACCACCTCATCCGAACCCCTATTCATTCCCCAAAGGAGTTCGTTCTATGTCATTCTCCGATCTCCTCTATCTTCGGCTCCGCCTCAACTACCACCGTCCAACAGGTCAACTACTCTATCGTAGAGATTCTTATCAAAGAAGACTATGGTGGTATGAGATCTTCCATTTGTGACGGCATGATATGTTTTAAGATAGGTAGTTCTTCAGCTATATTGTGTAACCCTTCTATTAGAAAATTCAAAAAATTGCCTCCAATAATATTTCCAGTTCCAGACCAAAGTTTTGTTCAAAGCGAATTTACCTTACTGCATGATCGTTTCACTAATAATTATAAGATTGTTGCTCTTAATCTCCTTGGTAGCAACAAAGAAGTCCATGTTCATATTGTAGGTACCGATTGTTGGCGAAGGATTCAGGACTTTCCAGGTCCTAGACTCACTCCTATGCCTCGGGGAATATTTCTGAATGACTCCGTTAATTGGTTGACATATGATTCGGCCTCTCGCACGCGTCTCATTGTTTCTCTTGATTTGGAGAAAGAGTCCTATCAAAAACTTTTGATTCCTGCCTTTGATGTTATTACGTCTTTTATTAGCTTCGGGATATTGAGGGGCTGTTTGTCAATTGTTTTTCAAAGGAACGAGTTTTCTGATGTTTGGATTATGAAAGAATTTGGAAATGAAAAGTCTTGGACTAAATTGGTAAGCGTTCCTTACACGAAAGAATGTGGTGTTTATGGTTATTCCAGAGCATTATATATTTCAAAGGATGATCAAGTGCTGGTGGATTTTTTTAATGAGAAATATGGTTTGGTGATTTATGATTCCATAAACAATACTTTTAAGATTCCTAATTTTCAGAAAAACATCCAAGGTGAGATGGTGACAGAAGATGTCTATGTTGAGAGCTTGATATGGCCTCTGTAG 1200 0.4083 MGLGGSKCGALNDTACSSPEETTTALTSLSLSNSLHAPPLSFDLIEEILCRLSVKHLLQLRCVCKSWNSLISRDSNFANKQLRLSTSNHERHHLIRTPIHSPKEFVLCHSPISSIFGSASTTTVQQVNYSIVEILIKEDYGGMRSSICDGMICFKIGSSSAILCNPSIRKFKKLPPIIFPVPDQSFVQSEFTLLHDRFTNNYKIVALNLLGSNKEVHVHIVGTDCWRRIQDFPGPRLTPMPRGIFLNDSVNWLTYDSASRTRLIVSLDLEKESYQKLLIPAFDVITSFISFGILRGCLSIVFQRNEFSDVWIMKEFGNEKSWTKLVSVPYTKECGVYGYSRALYISKDDQVLVDFFNEKYGLVIYDSINNTFKIPNFQKNIQGEMVTEDVYVESLIWPL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi276g00001 399 SMART fbox_2 40 80 IPR001810 GO:0005515
Vivi276g00001 399 CDD F-box_AtFBW1-like 40 75 - -
Vivi276g00001 399 ProSiteProfiles F-box domain profile. 34 80 IPR001810 GO:0005515
Vivi276g00001 399 SUPERFAMILY F-box domain 40 109 IPR036047 GO:0005515
Vivi276g00001 399 Gene3D - 35 95 - -
Vivi276g00001 399 Pfam F-box domain 40 75 IPR001810 GO:0005515
Vivi276g00001 399 NCBIfam F-box protein interaction domain 147 365 IPR017451 -
Vivi276g00001 399 PANTHER BNACNNG10540D PROTEIN 37 371 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi276g00001 194 353 Carbohydrate Esterase AT1G25141 21.264 9.48e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi276g00001 - - vvo:131650286 354.755