Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi274g00011 ATGGCATCATCATCCAGCTCATACAATTCACCTTGTGCCGCCTGCAAATTTTTGAGGAGAAAATGCATGCCAGGATGCATTTTTGCACCTTACTTTCCACCAGAAGAGCCACAAAAATTTGCAAACGTGCACAAAATATTTGGTGCTAGCAATGTGACAAAGCTTCTCAACGAACTCCTCCCACACCAAAGAGAGGATGCAGTGAACTCACTTGCCTATGAAGCCGAAGCACGAGTGAGGGATCCAGTTTATGGCTGTGTAGGTGCTATCTCTTTTCTTCAAAGACAAGTTCAGAGGCTCCAAAAGGAGCTTGATGCTGCTAACACCGATCTTCTTCGCTATTCTCTTACTGATATCCCTCCACCTCCACCGCCGTCATCTCTTCCTGTGCCACCGGGCATGGTGTCAGTTCAGCAAATGCCACAAAGACAGTTTAGTGGAAGTACTTATTCTTCTTTTCCTTATTCTCTTCCTTGGACTGATAATTCATCAGAGGACATGAGTGAGGGTGGAGGAGGAGGAAATCATTTGTGA 534 0.4551 MASSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANTDLLRYSLTDIPPPPPPSSLPVPPGMVSVQQMPQRQFSGSTYSSFPYSLPWTDNSSEDMSEGGGGGNHL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi274g00011 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 138 - -
Vivi274g00011 177 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
Vivi274g00011 177 Coils Coil 90 117 - -
Vivi274g00011 177 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi274g00011 1 170 AS2 family AT5G63090 65.969 2.19e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi274g00011 LOB 2.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi274g00011 - - mtr:25493732 305.064