Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi274g00002 ATGAACCCCTACGACAATCGTTACTCCGATTCCACTTCCTTCCGCGGCCGCCGCAGTGATCTCGTTGGACCTATGCCGCCACCTAATTTCGGCCGCGGCGGTCCCGCTCCTTACGGTGCTCCTTATGCATCCCATGCTCCCACCGGTTTCGGATCCGCACCTGTAACCCCGATTCCTCACTTTTTACCTCCTTCCGGTGGATTTAGTGTAGGTCGTGGCGGTGGTTTTGGCCCTAGATTGGGCAACGGTCACGCATCTGATAGAAAATATGACTCTGGTCGTTATGGTAGTAGTGGTGGTGGTGGAAGAGGTCGTGGTGGTTTTGGTGGTGGTGGTGGTAGAGGTGGAAGTCAAGGTTTTAGAGGCTCTGGTGGTGGTAGAGGAGGGAGAGGTGGCGGGTTTGGAGGTAGACATGGATCTTCTAAGGATGACTTGAATAATATTACTCTTCCGAAGCAAGATTTTAGGAATTTGGTTCCTTTTCAGAAGAATTTCTATGTTGAAAGCCCTGTGATAACAGCCATGTCTGATCAGCAAGTTATGCATTATCGTGCGAGTAGGGATATTACTGTTGAAGGGCATGATGTGCCAAAACCAATTCGGTCTTTTCACGAGGCTAATTTTCCTGATCATTGCCTTGAAGTTATTGCCAAGTTGGGTTTTGTTGAACCTACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTTACCGGTAGAGATTTAATTGGCATTGCTGAGACTGGCTCCGGTAAAACTCTGTCGTATTTACTTCCGGCTATAGTTCATGTCAGTGCACAACCTCGACTAGTACAAGGGGAGGGTCCTGTTGTCCTGGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTATGAAATTTGGGTCACGGTCAAATCTTAGATGTACATGCATATATGGGGGTGCTCCAAAGGGCCCTCAAATTCGTGATCTTAGAATGGGTGTTGAGATTGTTATTGCTACACCTGGTCGTCTAATAGATATGCTAGAAGCTCGGCACACAAACCTCCAGAGAGTGACATATCTTGTCTTGGATGAAGCTGATAGGATGTTGGATATGGGTTTTGAACCTCAGATTCGGAAGATTGTAAACCAGATTCGACCAGATAGGCAGACATTATACTGGAGTGCAACGTGGCCAAAGGAGGTTGAAGCTCTGGCAAGACAGTTTCTGCACAACCCATATAAGGTAGTTATTGGGTCACCATATCTAAAAGCAAACCAATCTATAAATCAAGTTGTTGAAGTTGTCACTGACATGGAGAAATATAACAGATTGATCAAGCTGCTGAAAGATGTGATGGACGGGAGCCGAATTCTAATATTTACGGAAACAAAAAAGGGATGTGACCAAGTTACAAAACAGTTGAGAATGGATGGATGGCCAGCATTATCTATCCATGGTGATAAAAACCAGTCTGAAAGGGACTGGGTTTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACCGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATAAAATGTGTCGTCAATTATGACTTTCCATCAAGCCTCGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGAGCTAAAGGAACTGCATACAGTTTTTTTACCCGTGCCAATGCCAAGTATGCGAGGGATTTGATAAAGATCTTACAAGATGCTGGTCAGATTGTTAGTCCTGCATTGTCTGAATTGACCCGGTCAGCTGGTTTTGGTCAACATGCATCAAAAGGAGGTTTTCGCTCAAGAGGACGGGGAGGCGGCTATGGCAATCGGGGTTCAACATCTGGATCCAATGCCATTCCTGTAGGCGGGAAGAGGCCGTGGCAGTATGTGTAA 1881 0.4625 MNPYDNRYSDSTSFRGRRSDLVGPMPPPNFGRGGPAPYGAPYASHAPTGFGSAPVTPIPHFLPPSGGFSVGRGGGFGPRLGNGHASDRKYDSGRYGSSGGGGRGRGGFGGGGGRGGSQGFRGSGGGRGGRGGGFGGRHGSSKDDLNNITLPKQDFRNLVPFQKNFYVESPVITAMSDQQVMHYRASRDITVEGHDVPKPIRSFHEANFPDHCLEVIAKLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLSYLLPAIVHVSAQPRLVQGEGPVVLVLAPTRELAVQIQQEAMKFGSRSNLRCTCIYGGAPKGPQIRDLRMGVEIVIATPGRLIDMLEARHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVEALARQFLHNPYKVVIGSPYLKANQSINQVVEVVTDMEKYNRLIKLLKDVMDGSRILIFTETKKGCDQVTKQLRMDGWPALSIHGDKNQSERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAYSFFTRANAKYARDLIKILQDAGQIVSPALSELTRSAGFGQHASKGGFRSRGRGGGYGNRGSTSGSNAIPVGGKRPWQYV 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi274g00002 626 MobiDBLite consensus disorder prediction 1 37 - -
Vivi274g00002 626 FunFam ATP-dependent RNA helicase RhlB 411 583 - -
Vivi274g00002 626 SMART helicmild6 460 541 IPR001650 -
Vivi274g00002 626 Gene3D - 165 411 IPR027417 -
Vivi274g00002 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 561 IPR027417 -
Vivi274g00002 626 CDD DEADc_DDX5_DDX17 213 408 - -
Vivi274g00002 626 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 435 580 IPR001650 -
Vivi274g00002 626 MobiDBLite consensus disorder prediction 69 147 - -
Vivi274g00002 626 FunFam probable ATP-dependent RNA helicase DDX17 163 410 - -
Vivi274g00002 626 MobiDBLite consensus disorder prediction 586 626 - -
Vivi274g00002 626 Pfam DEAD/DEAH box helicase 225 395 IPR011545 GO:0003676|GO:0005524
Vivi274g00002 626 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 232 407 IPR014001 -
Vivi274g00002 626 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 353 361 IPR000629 -
Vivi274g00002 626 Gene3D - 412 583 IPR027417 -
Vivi274g00002 626 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 180 579 - -
Vivi274g00002 626 SMART ultradead3 220 423 IPR014001 -
Vivi274g00002 626 CDD SF2_C_DEAD 420 550 - -
Vivi274g00002 626 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 201 229 IPR014014 GO:0003724
Vivi274g00002 626 Pfam Helicase conserved C-terminal domain 431 541 IPR001650 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi274g00002 189 579 Eukaryotic Initiation Factors Gene Family AT3G19760 35.714 2.03e-71 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi274g00002 K12823 - gmx:100817092 909.057