Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi273g00024 ATGGGTTGTATGTGTTGCAAGCCTTCTGCGATTGAGGATAGTAATGAGAGTCCAAGGGAGCGTTTGTCGAACAAAGCTGTGGTTGATTCGCGTGTGTCTAGTAGAGGGACTTCGTCGAGGAGGGAGGAAGTATATAGGGTGAAGGATAGAGGTGATAGTAACAATGATGCGAGGACGGCGTTGATTGATAAGCAAGGACAAGGGAATGGGTCGGTTAGAGTTCATGGGGATAATTTTGAAAGGAAGAGGGAGAAAATGGAGTATGTTGTTACTCAACATCCTGGGAATGGAACTGTTCCGAAAGCCATGGAAGGGGAACATGTTGCGGCTGGATGGCCGTCTTGGCTGGCTGCTGTTGCTGGTGAAGCAATCAAGGGATGGCTGCCACGGCGCGCAGACTCTTTTGAGAAATTGGATAAAATTGGTCAGGGAACTTATAGTAATGTTTATAGAGCCCGTGATCTTGAACAAAGAAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTCGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTACGTAGGCTTGATCATCCAAATGTCATTAAACTGGAAGGCTTGGTTACATCAAGGATGTCGTGCAGTTTATACCTTGTGTTTGAGTACATGGAGCATGACTTGGCTGGGCTTGCATCACATCCTGGACTCAAGTTTACAGAATCACAGGTTAAATGTTACATGCAGCAACTTTTACGCGGTCTTGATCACTGCCACAGCCGTGGTGTGCTGCACCGTGATATTAAGGGTTCCAATCTATTGATTGACAACAATGGAGTATTGAAAATTGCAGACTTTGGTTTGGCGAGCTTTTTTGATCCCAATTTAAATCAGCCACTCACAAGCCGAGTCGTCACGCTTTGGTATAGGCCACCTGAGCTTTTACTTGGAGCTACTTACTATGCCACTGCTGTAGATTTATGGAGTACAGGTTGCATACTTGCCGAGCTGTATGCTGGCAAGCCTATAATGCCTGGTAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTTTGTGGTTCGCCTTCCGAGGACTATTGGAGAAAATCAAAATTGCCTCATGCAACGATATTTAAGCCTCAACAACCCTATAGGCGTTGTGTTGCTGAAACATTCAAGGACTTTCCCGCACCTGCAATAGAACTGATAGAGACACTCTTGTCCATAGACCCTGCTGATCGTGGAACTTCAGCATCTGCTTTGATGAGCGAGTTCTTCTCAATAAAGCCTCTACCTTGTGATCCTTCAAGCTTGCCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAAGTACGGGACGAAGAAGCTAGACGACAAGGGGCAACAGGAAGCAAAGGCCAGAGACATGATCCTGAGAGAAGAGGAGTAAGAGAATCTCGAGCTGTACCCGCACCTGATGCCAATGCTGAACTAGTCGTGTCAATGCAGAAGAGACAAGGTCAGAACTATTCTCAAAGTAGGAGTGAGAAGTTTAACCCTCATCCTGAAGAAGCTGGTTCTGGATTTCCTATTGAACCCCCTAGACCATCACAAGTTGCAGAAGCAAGTGTTGATCCCCAAGCAAATCAACATAAAAGAGCCTCACATTCAGGCCCACTTACTCACCGCGCTGCTTGGGCGAAAGCTGGGAAGAACCAAGACGATGCTCCAAAGATTTCAGTGGGCGGCGACTTATCTACAATCTCAGGTTTAGTTGCAGCCAGGAGGAGTATGCTGTCTGACGATCGCAGAGAAAGTTCTGGATCATCACAAGTGGAGGCTCCAAAACTAATTACCAGGTTTCCAGGATCCTTCAAAGAGGCATCTGAATCATTGATGCAACAAAATCAAAATCAGAAGCATCATGTACACGCTTCTCAAAAAGAAGAAGCAAAAGGCAACAGCAAAGATCCAAATGTTGCTGGTTATGGTTCAAAAGGTTATAAAATTCATTATTCCGGTCCATTACTTGTTCCATCAAGCAACATGGACCAGATGTTGAAAGACCACGACCGCCAAATTCAAGAAGCGGTCAGAAGAGCACGTCTAGACAAGGCAAAAATGCGAAGACTCCAAGCTGAAGGGAACCAGAACCAAATAAGCAATTCATTATTTGTTTCTGGTCGTTGA 2148 0.4493 MGCMCCKPSAIEDSNESPRERLSNKAVVDSRVSSRGTSSRREEVYRVKDRGDSNNDARTALIDKQGQGNGSVRVHGDNFERKREKMEYVVTQHPGNGTVPKAMEGEHVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQRKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTESQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPNLNQPLTSRVVTLWYRPPELLLGATYYATAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPAPAIELIETLLSIDPADRGTSASALMSEFFSIKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGATGSKGQRHDPERRGVRESRAVPAPDANAELVVSMQKRQGQNYSQSRSEKFNPHPEEAGSGFPIEPPRPSQVAEASVDPQANQHKRASHSGPLTHRAAWAKAGKNQDDAPKISVGGDLSTISGLVAARRSMLSDDRRESSGSSQVEAPKLITRFPGSFKEASESLMQQNQNQKHHVHASQKEEAKGNSKDPNVAGYGSKGYKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRARLDKAKMRRLQAEGNQNQISNSLFVSGR 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi273g00024 715 FunFam probable serine/threonine-protein kinase At1g54610 218 459 - -
Vivi273g00024 715 Gene3D Transferase(Phosphotransferase) domain 1 218 458 - -
Vivi273g00024 715 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi273g00024 715 PANTHER CELL DIVISION PROTEIN KINASE 133 425 - -
Vivi273g00024 715 Coils Coil 680 700 - -
Vivi273g00024 715 CDD STKc_CDK9_like 135 419 - -
Vivi273g00024 715 MobiDBLite consensus disorder prediction 613 650 - -
Vivi273g00024 715 MobiDBLite consensus disorder prediction 1 56 - -
Vivi273g00024 715 MobiDBLite consensus disorder prediction 35 56 - -
Vivi273g00024 715 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi273g00024 715 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Vivi273g00024 715 SUPERFAMILY Protein kinase-like (PK-like) 129 421 IPR011009 -
Vivi273g00024 715 MobiDBLite consensus disorder prediction 429 570 - -
Vivi273g00024 715 MobiDBLite consensus disorder prediction 487 502 - -
Vivi273g00024 715 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Vivi273g00024 715 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Vivi273g00024 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vivi273g00024 715 MobiDBLite consensus disorder prediction 438 473 - -
Vivi273g00024 715 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi273g00024 127 451 Core Cell Cycle Gene Families AT5G10270 53.372 4.52e-117 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi273g00024 Pkinase 2.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi273g00024 - - gmx:100792173 1253.43