Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi270g00006 ATGTCCATCACAAACCAATCTCAATCTCAATCTCAAGCTTCAGCTTCAGCTTCTCCCACCTCAACAACAAAACGCACCTCCAAGAACCGCGACTCAACATTCCACGGCGTCCGGAAGCGAACCTGGGGACGCTATGTTTCAGAAATACGACTCCCAGGTCAGAAAACTCGGATATGGCTTGGCTCATTCCAGACGGCTGAAATGGCGGCGCGTGCTTATGACTCCGCGGCTTTCTTCTTAAAAGGTAGCTCGGCTAGCCTTAATTTTCCCGAAGAGGCTGTGTTTTTACCTCGTCCTGGTTCTTCTTCTAGGAAAGATATTCAATCGGCGGCGGCTAAAGCGGCTCGTCAACGAAGCCGCCAACAACAACAAGAAAATTCTTCTTCTTCTTCCATCGAAACGAAAAATGAAAATGAAAATAAAAATATTATTATTAATAATGACAATGATAATAATAATAATAATAATATTAATAATAGTAATAATAATAGTGTTGATGATTTTTCTATTGAGATGATGGAGTTTTGGAATCAAGAAGAATGTGGTGCATCGACGACGTCGTTTTGGGATATGAAAGATGCTCCTTTAATGAGTCCAACAAGGGTGGGGTCCATTTATGGAGATATGATGACATGGAACGAAGTGTTTGATTTCAATGATGACATTTTAGCCATGGCACATCCATAA 687 0.4119 MSITNQSQSQSQASASASPTSTTKRTSKNRDSTFHGVRKRTWGRYVSEIRLPGQKTRIWLGSFQTAEMAARAYDSAAFFLKGSSASLNFPEEAVFLPRPGSSSRKDIQSAAAKAARQRSRQQQQENSSSSSIETKNENENKNIIINNDNDNNNNNNINNSNNNSVDDFSIEMMEFWNQEECGASTTSFWDMKDAPLMSPTRVGSIYGDMMTWNEVFDFNDDILAMAHP 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi270g00006 228 MobiDBLite consensus disorder prediction 1 27 - -
Vivi270g00006 228 CDD AP2 32 91 IPR001471 GO:0003700|GO:0006355
Vivi270g00006 228 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Vivi270g00006 228 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Vivi270g00006 228 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Vivi270g00006 228 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vivi270g00006 228 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Vivi270g00006 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 158 - -
Vivi270g00006 228 MobiDBLite consensus disorder prediction 96 162 - -
Vivi270g00006 228 MobiDBLite consensus disorder prediction 102 162 - -
Vivi270g00006 228 SUPERFAMILY DNA-binding domain 32 91 IPR016177 GO:0003677
Vivi270g00006 228 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Vivi270g00006 228 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Vivi270g00006 228 MobiDBLite consensus disorder prediction 1 35 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi270g00006 34 168 AP2-EREBP Transcription Factor Family AT2G35700 48.889 1.94e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi270g00006 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi270g00006 K09286 - zju:107409738 136.346