Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi269g00001 ATGGATGAGCTTGTCTGTATTCAAAATTGCGAACCCGATATTTTATTATGGGACAATGAACTCAATGGCACTCCATTATCGATAATGGATACTCCTCCCATGCAACAATTATCATTTTCCGAACGGTTAGAGATTAATGAGCCTATGGCCGTCTGGTTCAAGTGGAAAGGGAAGTGGCATGCAGGCATCAAATGTGCAAGAGATGATTTGCCAATGTCCACTCAGAAAGACAAACCAGTTGACGATAATCAGAACAAATATTTCACCATATTTTCTCCGGATATAAAGAATTATTGTTGGGTTAAAATGATTTCTGTTCAATCGATTAATGAATTTCCTCAGCCTATAGCATATGAAACTCATCAAGATGGGTTGAAAATTGTACAAGACTTGACTATTGCTCGACGCTTTACAATGCAAAACCTCCTCATCGAAATGATTAATATTGTTGAACAAATTCATTCTCATGCTTTGACAGAAGATGCTCGCGATGTGATAGTTTGGAAGCGATTTGCATTGGAAGCTTCTGAGTGTAAAAGCTATTCAGATTTTGGAAGAATGGTTCAGCGACTGCAGAAGAGCATAGTGCAGGGTTATATAATGGATGATTGGAAACTGCGTTGTTCTAAGTCTTGGGTTGATCGATGTGCGAAGGCAAAAAATGCAGAAACAATTGAGCTGCTGACTGAGGAACTGGTTGATTCCATATTGTGGAATGATGTTTGCACTCACTGGATTGAAGACCCTGAGCCAAAATTACGTTATGTATGGAAAACATGGAAACATGATGTAATGAAATGGTTTTCAAGGAACCCTGTGTTATCTAGCAGCATTGGCTCGCAGCCACGTGCTTCTAGCTCTTATGGATTGTGCCAAACAAGCTTTCAAGTTGGTTTCAGAAGGCCTAAACTTCAAATTCGTCGTTCGATGCATAAAAGTACCGTGGAGGTGCCTGTGGAATCTGAGTTTCCTAGTCAGTTGATGAAGGAATTGAGTGATATTGGAGTCGAGGCTGTAGATTGCGATGTCTTGCCCATCACAGAAATGGTACCAAGGCCTATGGATGATGAAGAAAGGCCTATGGATGATGAAGAGGCTATTGAATTATTTGTAGAACCTGATATTGATAATACCAAGAGTCGACAATGTGAAAAGTTTATCGAAGCCAAGGGAAGGCAATGTAGAGGACGAGCAATTGGTAGCGATAAATATTGTTGTGCTCATTTCTCAAGAAAACCTGCAAAAGAGGATAAAGCTCCTACTCCAATGTGTGGAGGTACAACTATGGCTGGTACTAAATGCAAGCATCATTCACATCCTGGCTTTTCATTCTGCAGAAAGCATTTGAGCAATGTTGAGACTAAAAATAGATCAAATTTGAAACGTCGTAGATCGAAAAGGAAAGCAAAAGTATACTGCAGTGGTTCGACATCGAAGAGAAGGGTTCGCGAAGACATAGGCGTGGCACCTCCGAGAAGTCCATTGGATATTGATCCGGTATCGGTCATTGACGATGATTCTTTTATTGCAAGGAACATTTTACGTGAAACACTCGCGCTTTCTGGTAGTGATCATAATGAGGCTCTTCAATGGATAGATTCTCCTCTTAATGACAATGATACTGATAATGATAATTCAATTAAGTGTAAGGTTTGTTTTGAAGAATTTTCCGATGATGAATCACTCTGTAACCATTGGATGGAAAATCATGAAAGGGAAGCACATTGGTTATTCATGAGTTATGCTTGTGCAATTTGTCTTGATTCCTTCACCAACAAGAAACTATTGGAATCGCATGTTCCGGATAGACATCATGTGCAGTTCATTCAACACTGCTTGCTTTTGAAATGTAATGCTTGTGGTGGTAATTTTGGAAATATGGATGAATTTTGGTTACATGTTAAGTCAATTCACTCTTCCGAATTCATGGTATCAAAAGCTCCTAAGCAACTAACATTGACACATGGTGATGATTCTCTGGAAATGATTGAGCACATAAATGAAGCTTCTTTGGAAGAACCTCAGCCTAACAATCTCAATATCTTATCGATTGCTTGCACAAATTCCTGTGAAGTTAATCTTGAGGCATCATTGATGGAGAAATATGGATATTTACCAGAAAGACTTAATTTGAGGGCATCTGAAGATTGCAGTGAGAGAGAAATTCTTGAGAATTCTAGTCGGAATGAGATTCACCCTGTCGTCGTTAGTCCACCCTCATTAAATTTGGGTTCATTGCAAAAGGCTATTGTTTTATGTGGTGACATAAGCTTTGGGAAGGAACCAACTCCAGTGATTTGTGTATTGGATCAAGAAATACTCAATTCTCTTTTTGAAAAAGAGCGATACGTAAATCTTCCTAGCCCTTGGGAAAGTTTCTCCTATGTGACAAAACAAATGCTTGATCGATTTCCTACTCATAATCACGAGGAGAGCCTGCAGCTGACATGTTCTTGCTCCTCTTCTACATGTTGTCGTAAAACTTGTGATCATATATACCTTTCCGATAATGGTCTTGATAATGCAAAAGATATATTCGGGAAACCAATGAGCGGATCAGAGTTCCCATACAATAAAAATGGTCGACTCATGTTGAAGGAAGGTTATCCGGTGTACGAGTGTAACGATTTATGCAGATGTAGTAAAACCTGCCAGAACAGAATATTGCAGAAGGGAATTCAAGTTAAATTGGAAGTCTTTAAAACAAAGGAAAAGGGATGGGGAGTAAGGGCTGGCGAGGACATTCTTCGTGGAACGTTCGTGTGTGAGTATATTGGAGAAGTTGTAGCAAAGAAGGAGGTACACAAAAGGCGAGAAAGATACGGTAAAAACGGTGAATATTTCTATGACATTGGTGCTCATGTTAGTGATACGAGTGGAATTACAGAAGGACATGCGAGCGAATACGTTATTGATTCTACTAGTTATGGAAACGTCTCAAGATTCATTAATAATAGTTGTTCGCCGAATCTTGCGAGTTACCTAGTTTTTATAGAGAGCATGAATAGTGAGCATGCACATATTGGTCTTTATGCAAATAGAGATATTGCTTTGGGGGAAGAGTTGACATATAGTTATGACTATGAGTTTGTTGGTGGAGAAGAATATCCTTGTCTTTGTGGATCCTTGAAGTGCAGAAACTGA 3144 0.3925 MDELVCIQNCEPDILLWDNELNGTPLSIMDTPPMQQLSFSERLEINEPMAVWFKWKGKWHAGIKCARDDLPMSTQKDKPVDDNQNKYFTIFSPDIKNYCWVKMISVQSINEFPQPIAYETHQDGLKIVQDLTIARRFTMQNLLIEMINIVEQIHSHALTEDARDVIVWKRFALEASECKSYSDFGRMVQRLQKSIVQGYIMDDWKLRCSKSWVDRCAKAKNAETIELLTEELVDSILWNDVCTHWIEDPEPKLRYVWKTWKHDVMKWFSRNPVLSSSIGSQPRASSSYGLCQTSFQVGFRRPKLQIRRSMHKSTVEVPVESEFPSQLMKELSDIGVEAVDCDVLPITEMVPRPMDDEERPMDDEEAIELFVEPDIDNTKSRQCEKFIEAKGRQCRGRAIGSDKYCCAHFSRKPAKEDKAPTPMCGGTTMAGTKCKHHSHPGFSFCRKHLSNVETKNRSNLKRRRSKRKAKVYCSGSTSKRRVREDIGVAPPRSPLDIDPVSVIDDDSFIARNILRETLALSGSDHNEALQWIDSPLNDNDTDNDNSIKCKVCFEEFSDDESLCNHWMENHEREAHWLFMSYACAICLDSFTNKKLLESHVPDRHHVQFIQHCLLLKCNACGGNFGNMDEFWLHVKSIHSSEFMVSKAPKQLTLTHGDDSLEMIEHINEASLEEPQPNNLNILSIACTNSCEVNLEASLMEKYGYLPERLNLRASEDCSEREILENSSRNEIHPVVVSPPSLNLGSLQKAIVLCGDISFGKEPTPVICVLDQEILNSLFEKERYVNLPSPWESFSYVTKQMLDRFPTHNHEESLQLTCSCSSSTCCRKTCDHIYLSDNGLDNAKDIFGKPMSGSEFPYNKNGRLMLKEGYPVYECNDLCRCSKTCQNRILQKGIQVKLEVFKTKEKGWGVRAGEDILRGTFVCEYIGEVVAKKEVHKRRERYGKNGEYFYDIGAHVSDTSGITEGHASEYVIDSTSYGNVSRFINNSCSPNLASYLVFIESMNSEHAHIGLYANRDIALGEELTYSYDYEFVGGEEYPCLCGSLKCRN 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi269g00001 1047 ProSitePatterns Zinc finger C2H2 type domain signature. 617 638 IPR013087 -
Vivi269g00001 1047 ProSitePatterns Zinc finger C2H2 type domain signature. 549 570 IPR013087 -
Vivi269g00001 1047 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 737 1046 - -
Vivi269g00001 1047 ProSiteProfiles Pre-SET domain profile. 815 892 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi269g00001 1047 SUPERFAMILY SET domain 745 1040 IPR046341 -
Vivi269g00001 1047 Gene3D SET domain 745 1047 IPR046341 -
Vivi269g00001 1047 Gene3D Classic Zinc Finger 532 608 - -
Vivi269g00001 1047 SMART set_7 895 1033 IPR001214 GO:0005515
Vivi269g00001 1047 SMART c2h2final6 581 604 IPR013087 -
Vivi269g00001 1047 SMART c2h2final6 547 570 IPR013087 -
Vivi269g00001 1047 SMART c2h2final6 615 638 IPR013087 -
Vivi269g00001 1047 ProSiteProfiles Zinc finger C2H2 type domain profile. 615 643 IPR013087 -
Vivi269g00001 1047 SMART preset_2 753 879 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi269g00001 1047 Pfam Zinc finger C2H2-type, 3 repeats 583 686 IPR040689 -
Vivi269g00001 1047 Pfam Pre-SET motif 757 887 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi269g00001 1047 ProSiteProfiles SET domain profile. 895 1027 IPR001214 GO:0005515
Vivi269g00001 1047 ProSiteProfiles Post-SET domain profile. 1034 1047 IPR003616 -
Vivi269g00001 1047 Pfam SET domain 906 1026 IPR001214 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi269g00001 576 659 C2H2 Transcription Factor Family AT2G23740 47.619 1.77e-19 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi269g00001 Pre-SET 4.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi269g00001 - - psat:127136654 1668.67