LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi268g00008	ATGTTGAATCTAATTAATACAGATTTCCTTTTCTCTTCCTTGGTGCCTTTCACTTGTTCACCAAATCTGAAAACAATGGTTTCTTCCTGCATTCAATCTCACTCTCTATTTCTTGCACTTTTGTTCTTTTCTGCCAATGGAACAAACTTCACATACCCTACGAATTCCCCCCTTTCCTGTGACACATATGTTGCATACTTTGCTCACTTTCCAAATTTTTTAACCCTCACAACCATATCTGATATGTTTGACACCACTCCTCAATCCATTGCAAGAGCAAGCAACATAAAAGATGAAAATATGGACCTTGTTCCAGGCCAACTTTTGCTAATACCTATAACTTGTGGCTGCAGTGGAAATGGAAACTACTCTTTTGCTAATATCTCACACTTGATCAAACAAGGTGAAAGTTACTACTATCTTTCAACCATTTCATATCAGAATCTCACCAATTGGATGACAGTGGAAGATTCAAATCCTAACCTGAATCCATATTTGTTGACAGTGGGAACCAAAATAGTCATTCCTTTGTTCTGTAGGTGCCCTTCAAAAGGGATAGAGTCTTTGATTACTTATGTGTGGCAGCCTAATGACAATCTTACCCTTGTAGCTTCCAAGTTTGGTGCATCACAGCATGACATAATCACTGCAAATGCAAACAATTTTGGCCAGAATTTTACTGCTGCAACCAACCTTCCAGTTTTTATCCCAGTGAAAAGCTTACCAGCTATTTCACAATTATTACACTATTCTTCAAGTGGAAGAAAGAAAAACAATCATTTTCCAATTATCATTTTCATTGGTATATGTCTAGGATGCACTATTCTGATTTCGCTGTCATTACTAGTATATGTGTATTGTTTGAGGAAGAGAAAAGCTTGTGAGAATAAGTGTGCGCCTTCTGTGGAGATAACAGATAAGTTAATTTCAGAAGTTTCAAACTATGTAAGTAAGCCAAAAGTGTATCCAGCTGGTATGATTATGGAAGCAACAATGAACTTCAATGAACAGTGTAGGATAGGGAAATCCGTGTACAAAGCTAAAATTGACGGTCATGTTTTAGCTGTGAAAAATGTTAAGGAAGACATCACAGTCACAGAAGAGTTGGTGATTCTTCAAAAGGTAAATCATGCAAATCTTGTAAAACTAATCGGCGTCTCTTCAGGATATGTTGGAAATCACTTTCTTGTATATGAATATGCGGAAAATGGATCACTTTATAACTGGCTGTTCTCTAAACTTTCCACTGCTTCAAGCTCAGTGGTTTCCCTCACATGGAGTCAGAGGTTAAACATAGCAATTGATGTTGCAATTGGTCTGCAATACATGCATGAACACATAGAACCAAGTATAGTCCATAGAGACATCACATCAAGTAACATCCTTCTTGACTCAAACTTTAAGGCTAAGATATCAAATTTTTCTGTTGCAAGAACCACAAAGAATCCTATGATAACAAAAGTCGATGTTTTTGCTTATGGTGTTGTTCTGTTAGAGTTATTAACAGGAAAGAAGTTTTTGTCTTATAGCGAAAGTAGCGAAGTGAATATGTTATGGAAAGATATTAAGGGTTTGTTTGATATAGAAGAGAAGAGTGACGAAAGGGTTAGAAGATGGATGGATCCTAAGTTGGGGAAGTCTTTTAATGTTGTTGAAGCTCTTAGTTTGTTCTCTTTGGCAGTGAATTGCATAAAAGAACAATCTTTGTTAAGACCAACAATGGGAGAAGTTGTTCTTAGCCTTTCCCTTCTCACTCAACATTCTCCTACTTTGTTGGAGAGGTCTTGTACTTACGGATCAGATGTTGAGATTATAACTGGTATGGTTAGTCCCATCTTAGCTCGTTGA	1848	0.369	MLNLINTDFLFSSLVPFTCSPNLKTMVSSCIQSHSLFLALLFFSANGTNFTYPTNSPLSCDTYVAYFAHFPNFLTLTTISDMFDTTPQSIARASNIKDENMDLVPGQLLLIPITCGCSGNGNYSFANISHLIKQGESYYYLSTISYQNLTNWMTVEDSNPNLNPYLLTVGTKIVIPLFCRCPSKGIESLITYVWQPNDNLTLVASKFGASQHDIITANANNFGQNFTAATNLPVFIPVKSLPAISQLLHYSSSGRKKNNHFPIIIFIGICLGCTILISLSLLVYVYCLRKRKACENKCAPSVEITDKLISEVSNYVSKPKVYPAGMIMEATMNFNEQCRIGKSVYKAKIDGHVLAVKNVKEDITVTEELVILQKVNHANLVKLIGVSSGYVGNHFLVYEYAENGSLYNWLFSKLSTASSSVVSLTWSQRLNIAIDVAIGLQYMHEHIEPSIVHRDITSSNILLDSNFKAKISNFSVARTTKNPMITKVDVFAYGVVLLELLTGKKFLSYSESSEVNMLWKDIKGLFDIEEKSDERVRRWMDPKLGKSFNVVEALSLFSLAVNCIKEQSLLRPTMGEVVLSLSLLTQHSPTLLERSCTYGSDVEIITGMVSPILAR	615

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi268g00008	615	Gene3D	Phosphorylase Kinase; domain 1	306	400	-	-
	Vivi268g00008	615	Gene3D	Transferase(Phosphotransferase) domain 1	484	591	-	-
	Vivi268g00008	615	PANTHER	LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED	48	588	-	-
	Vivi268g00008	615	Gene3D	LysM domain	75	120	IPR036779	-
	Vivi268g00008	615	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	451	463	IPR008266	GO:0004672\|GO:0006468
	Vivi268g00008	615	SMART	LysM_2	75	112	IPR018392	-
	Vivi268g00008	615	SMART	LysM_2	129	176	IPR018392	-
	Vivi268g00008	615	Pfam	LysM domain	75	112	IPR018392	-
	Vivi268g00008	615	Pfam	LysM domain	132	176	IPR018392	-
	Vivi268g00008	615	Gene3D	Transferase(Phosphotransferase) domain 1	401	483	-	-
	Vivi268g00008	615	ProSiteProfiles	Protein kinase domain profile.	316	591	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi268g00008	615	ProSiteProfiles	LysM domain profile.	190	234	IPR018392	-
	Vivi268g00008	615	SUPERFAMILY	Protein kinase-like (PK-like)	316	582	IPR011009	-
	Vivi268g00008	615	Pfam	Protein tyrosine and serine/threonine kinase	355	481	IPR001245	GO:0004672\|GO:0006468

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi268g00008	43	582	Receptor kinase-like Gene Family	AT2G23770	30.167	3.51e-59	207

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Vivi268g00008		PK_Tyr_Ser-Thr	1.9e-21	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi268g00008	-		-	vra:106777834	656.366