LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi267g00002	ATGGGGTTAATCGATCTCAACACTACTGAAGATGATGAAACACCTTATTCAGCTCTTTCTTCTTCCTCTTCTTCTACTCACTCTGGGATAAGCACTTCTGCTTCTGCTATGGTTCTTCCTCCTCCTGCTTCTTCTCCTTCTCCTCCTCCGGCTCAGGGTTCGGTTTGTTTGGAGCTATGGCATGCTTGTGCTGGTCCTTTGATCTCTTTGCCTAAGAAAGGAAGCATTGTTGTGTATGTTCCACAGGGTCACTTTGAACAGGCTCATGATTTTCCTGTTTCTGCTTGTAGTATTCCTATTCCACCTCATGTTTTCTGTCGTGTTCTTGATGTTAAGCTCCATGCTGAGGAAGGGAGTGATGAAGTGTATTGCCAGGTCTTGTTGGTTCCTGAAAATCAGCAAGTGGAGCAAAATGTACGGGAAGGGGTAATCGATGCGGATGCGGAAGAGGAGGATGCTGAAGCTATTGTGAAGTCTACAACTCCCCATATGTTCTGCAAGACTCTCACAGCTTCTGATACTAGCACTCATGGAGGATTCTCGGTGCCTCGTCGAGCAGCTGAAGACTGCTTTCCTCCCCTGGATTACAGCCAGCAGAGACCTTCTCAAGAGCTTGTAGCTAAGGATTTGCATGGCCTGGAATGGAGGTTTCGACACATTTATAGGGGGCAGCCAAGGAGGCATTTGCTGACAACTGGGTGGAGTGCATTTGTGAACAAGAAGAAGCTCGTGTCTGGTGATGCTGTGTTGTTTCTTAGGGGTGACGATGGAGAACTGAGGTTAGGGATTCGTAGGGCTGTTCAGTTGAAAAATTCTGGTTCCTTTGGAGCTTCTGGTATGCAATTGGATCCTAGCTCTCTCATGGACGTTGTGAATGCTTTATCCAAAAGATCTGCGTTCAGTGTCTGCTACAATCCAAGGGTCAGCTCTTCAGATTTCATCATACCTGTTAACAAGTTCATAAAGAGCCTTGATTGCTCTTACTCTGCTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAACGAAGAGTCACTGGATTAATTGCTGGTATAAGTGACGTCGATCCTCATAGATGGCCTGGATCTAAATGGAAATGCCTATTGGTGAGGTGGGATGACATAGAAGCATCGAGGCATAACAGGGTTTCCCCTTGGGAAATCGAGCCATCTGGTTCTGCTTCCTCTACCAGTAACCTGATGGCTGCAAGTTTGAAGAGGAGCAGGATTGGATTCACTTCATCCAAGCTAGATTTTCCAGTTCCCAATGGGATTGGTGTGTCAGACTTTGGGGAATCATTGAGGTTCCGAAAGGTCTTGCAAGGTCAAGAAATTATGGGCATGAATACTCCCTACGACAGTATTAATGCTCAGAGTCCCCGGTTATACGAGCTAGGGAGATGTTATCCCGGTTCAATCTGTTCCGGGATTGCCGCACCAGGAAACATCAGAATGCCTCAGGCAACTTCTGATTTTCCCTGTAATGGCATAGGCTTTGGTGAATCTTTCCGATTCCAAAAGGTCTTGCAAGGTCAAGAAATTCTTCCGTGTCCACCACCCTACGGTCGATCCTCGTTTGACGAGTCCCGTGGAAATGGTTTCCTTGGACGCTACGATGGTTATCAACTACTCGGTGGTTCCAGAAACGGATGGCCAGCACAGATGCATGATAATCCTTCACATTTGCACGCGTCTGTTACAGCTGGACAAGTTTCATCTCCATCATCTGTTTTAATGTTCCAGCAGGCTGTTAATCCAGTTTCAAACACTCGTTATGATAACGGTAATCGCAATCAGGGTTCATACATATCTGAAATGAAAAGTGGAATGTTTGCGTCTTCCCTACTCGACAAACCTATTCAGGAAAGCACAAATTCTCTCGGTATGCAGAATTTTCTCAATAACAACCAGTTGGATGATATTTCAAGGTCTCGTAATTCGACCTCAGCACTAAAAGGCAATCAAGAAAAAAACTCGACATATAAAAGTGGCTGCAGACTCTTTGGATTTTCATTAACCGACGACACCTACGTTGCAAACAAAGAAGCTGCTCTTGCCTCAAACATCACTTCTCAATTCAACAAGGACTACGAAGGAGGTTGA	2112	0.4555	MGLIDLNTTEDDETPYSALSSSSSSTHSGISTSASAMVLPPPASSPSPPPAQGSVCLELWHACAGPLISLPKKGSIVVYVPQGHFEQAHDFPVSACSIPIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENQQVEQNVREGVIDADAEEEDAEAIVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAVQLKNSGSFGASGMQLDPSSLMDVVNALSKRSAFSVCYNPRVSSSDFIIPVNKFIKSLDCSYSAGMRFRMRFETEDAAERRVTGLIAGISDVDPHRWPGSKWKCLLVRWDDIEASRHNRVSPWEIEPSGSASSTSNLMAASLKRSRIGFTSSKLDFPVPNGIGVSDFGESLRFRKVLQGQEIMGMNTPYDSINAQSPRLYELGRCYPGSICSGIAAPGNIRMPQATSDFPCNGIGFGESFRFQKVLQGQEILPCPPPYGRSSFDESRGNGFLGRYDGYQLLGGSRNGWPAQMHDNPSHLHASVTAGQVSSPSSVLMFQQAVNPVSNTRYDNGNRNQGSYISEMKSGMFASSLLDKPIQESTNSLGMQNFLNNNQLDDISRSRNSTSALKGNQEKNSTYKSGCRLFGFSLTDDTYVANKEAALASNITSQFNKDYEGG	703

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi267g00002	703	Pfam	Auxin response factor	291	371	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
	Vivi267g00002	703	CDD	B3_DNA	163	265	IPR003340	GO:0003677
	Vivi267g00002	703	FunFam	Auxin response factor	163	267	-	-
	Vivi267g00002	703	FunFam	Auxin response factor	327	398	-	-
	Vivi267g00002	703	Gene3D	-	327	401	-	-
	Vivi267g00002	703	Gene3D	-	163	267	IPR015300	-
	Vivi267g00002	703	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	54	683	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Vivi267g00002	703	SUPERFAMILY	DNA-binding pseudobarrel domain	158	272	IPR015300	-
	Vivi267g00002	703	MobiDBLite	consensus disorder prediction	1	51	-	-
	Vivi267g00002	703	Pfam	B3 DNA binding domain	165	266	IPR003340	GO:0003677
	Vivi267g00002	703	ProSiteProfiles	B3 DNA-binding domain profile.	165	267	IPR003340	GO:0003677
	Vivi267g00002	703	MobiDBLite	consensus disorder prediction	10	40	-	-
	Vivi267g00002	703	SMART	B3_2	165	267	IPR003340	GO:0003677

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi267g00002	54	698	B3 DNA Binding Superfamily	AT5G60450	41.945	3.19e-144	438

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Vivi267g00002		B3	3.1e-22	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi267g00002	K14486		-	gmx:100789906	995.727