Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi266g00006 ATGAGGTATATTAGGACAAACAGCTTCAAGAGACTCTTCTCATTCAAAAAACATTCTTTAGAGAAAGAAAATGATAACACCTTGAAGATTCTTCCATATGAAGAACAACATTTTCAAAAACCCACTTGGAAATGTTTCTCTTATGAAGAATTATTTGATGCCACCAATGGCTTCAACTCAGAAAACATTGTTGGAAAAGGAGGGTATGCAGAAGTATACAAAGGAACATTGAAAAATGGAGAAGAAATAGCTGTGAAGAGATTAACAAGAACTTCAAGAGATGAGCGAAAAGAGAAAGAGTTTTTGACAGAGATTGGAACAATAGGACATGTTCGTCATTCAAATGTATTGTCTCTACTAGGTTGTTGTATTGACAATGGACTTTACTTTGTTTTTGAGTTATCCACAACAGGTTCTGTTTCATCTATTCTTCATGATGAAAAGATGGATCCTTTAGATTGGAAAACAAGGTGTAAGATAGTTCTTGGGACGGCGCGTGGACTTCACTACTTGCATAAAGGTTGCAAGAGGAGAATAATTCATAGAGATATCAAAGCATCAAATATTTTGTTGACCAAAGATTTTGAACCACAGATATCTGATTTTGGATTAGCAAAATGGCTTCCATCTCAATGGACTCATCACTCAATTGCTCCAATAGAAGGAACATTTGGACATTTGGCACCAGAATACTATTTGCATGGAGTTGTGGATGAGAAAACAGATGTGTTTGCATTTGGTGTTTTCTTGCTTGAAGTCATTTCTGGTAGGAAACCTGTTGATGGGTCTCATCAAAGTTTACATAGTTGGGCTAAACCAATTTTGAACAAGGATGGCATAGAAGAGTTGGTAGATGCAAGGCTTGAAGGGACTTATGATGTGAACCAGTTAAAGAGATTTGCCTTTGCTGCATCTCTTTGTATTAGGGCATCTTCCACTTGGCGACCTAACATGACTGAGGTATTGGAAATAATAGAGGAGGGAGAGATAGAGATAGATAAAGAGAAATGGAAAATGCCAGAGGAAGAAGAAGAACAAGAAGATGAGTTTTGGGGGTTTGAGGATTTGGAATATGAATATGATACTTCATTTTCAATGTCTTTAATTGATTCAATTGAAAGTAATTAA 1128 0.3608 MRYIRTNSFKRLFSFKKHSLEKENDNTLKILPYEEQHFQKPTWKCFSYEELFDATNGFNSENIVGKGGYAEVYKGTLKNGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVRHSNVLSLLGCCIDNGLYFVFELSTTGSVSSILHDEKMDPLDWKTRCKIVLGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKDGIEELVDARLEGTYDVNQLKRFAFAASLCIRASSTWRPNMTEVLEIIEEGEIEIDKEKWKMPEEEEEQEDEFWGFEDLEYEYDTSFSMSLIDSIESN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi266g00006 375 Gene3D Transferase(Phosphotransferase) domain 1 136 350 - -
Vivi266g00006 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vivi266g00006 375 Pfam Protein tyrosine and serine/threonine kinase 61 265 IPR001245 GO:0004672|GO:0006468
Vivi266g00006 375 ProSitePatterns Protein kinases ATP-binding region signature. 64 86 IPR017441 GO:0005524
Vivi266g00006 375 FunFam Putative receptor-like serine/threonine-protein kinase 136 352 - -
Vivi266g00006 375 PANTHER OS08G0249100 PROTEIN 28 357 IPR046958 -
Vivi266g00006 375 ProSiteProfiles Protein kinase domain profile. 58 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi266g00006 375 SMART serkin_6 58 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi266g00006 375 SUPERFAMILY Protein kinase-like (PK-like) 34 325 IPR011009 -
Vivi266g00006 375 Gene3D Phosphorylase Kinase; domain 1 29 133 - -
Vivi266g00006 375 FunFam Putative receptor-like serine/threonine-protein kinase 25 134 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi266g00006 46 334 Trihelix Transcription Factor Family AT4G32710 44.518 2.72e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi266g00006 PK_Tyr_Ser-Thr 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi266g00006 - - gmx:100305398 613.224