Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi261g00007 ATGCATATGGAGAAAAGTAAGAGTAGAGGTGTGAGAAAAGGTGCATGGACATATGAAGAAGACAAACTTCTCAAAGCTTGTATTGACAAGTATGGTGAAGGAAAATGGCATTTAGTTCCACAAAGAGCAGGATTGAATAGGTGCAGAAAAAGTTGTAGATTGAGATGGTTAAATTATTTAAACCCCACCATCAACAGAGAAAATTTTTCTGAGGATGAAGTTGATATGATTCTAAGGTTACACAAACTCTTAGGGAACAGATGGACACTAATTGCTGCAAGGCTTCCTGGTAGAACATCTAATGATGTGAAGAATTATTGGCACACACACTTACGAAAGAAGATGATTTCAAGAAAATTAGAAGAAAAGAAAGAAAAGAAGAAACCAAATGAAACCATGAAAGCTCATGAAATTATTAAACCTCAACCACGAACATTTTTATCTCATTCACCTCGGTTGAATGGTAAACATATTGAGAAACCAATAGTGGCAGTTTCAACTAAAGATGCAAGTGTTGCGAAAGATGGTAACTTCGATACTATGCTGCCAATTAATGATAATGGAGATCATGCTATGTGGTGGGAAAGTTTGTTGAACTTGAGAAATGATAAAATTGGCTCATGCTCTTTACTACAAGAAGAGGGAAATTCTATTTTAGAGTTACCAAATATTGAGAATTTTTTTTATTGGAGGTCCCAGTAA 702 0.3504 MHMEKSKSRGVRKGAWTYEEDKLLKACIDKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPTINRENFSEDEVDMILRLHKLLGNRWTLIAARLPGRTSNDVKNYWHTHLRKKMISRKLEEKKEKKKPNETMKAHEIIKPQPRTFLSHSPRLNGKHIEKPIVAVSTKDASVAKDGNFDTMLPINDNGDHAMWWESLLNLRNDKIGSCSLLQEEGNSILELPNIENFFYWRSQ 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi261g00007 233 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 136 - -
Vivi261g00007 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vivi261g00007 233 Gene3D - 4 66 - -
Vivi261g00007 233 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vivi261g00007 233 CDD SANT 68 111 IPR001005 -
Vivi261g00007 233 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vivi261g00007 233 FunFam Myb transcription factor 13 65 - -
Vivi261g00007 233 CDD SANT 15 60 IPR001005 -
Vivi261g00007 233 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vivi261g00007 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vivi261g00007 233 Gene3D - 68 140 - -
Vivi261g00007 233 SMART sant 65 113 IPR001005 -
Vivi261g00007 233 SMART sant 12 62 IPR001005 -
Vivi261g00007 233 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Vivi261g00007 233 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi261g00007 9 198 MYB Transcription Factor Family AT1G66370 51.471 1.49e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi261g00007 Myb_DNA-binding 6.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi261g00007 - K09422 tpra:123921946 334.339