Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi261g00002 ATGGAGAAAAGTAAGAGTAGAGGTGTGAGAAAAGGTGCATGGACATATGAAGAAGACAAACTTCTCAAAGCTTGTATTGACAAGTATGGTGAAGGAAAATGGCATTTAGTTCCTCAAAGAGCAGGATTGAATAGGTGCAGGAAAAGTTGTAGATTAAGATGGTTAAATTATTTAAACCCAGCTGTCAATAGAGAGGGTTTTTCTGAGGATGAAGTTGATATGATCTTAAGGTTACACAAACTTCTAGGAAACAGATGGTCATTAATTGCTGCAAGGCTTCCTGGCAGAACAGCTAATGATGTGAAAAATTATTGGCACACACACTTGCGCAAGAAGATGATTTCAAGAAAATCAGATGAAAAGAAAGAAAAAGAAAAACCTAAGGAAACCATAAAAGCTCATGAAGTTCATGAAGTTATTAAACCTCAACCTCGAACTTTTTCATCTCATTCACCATTGTTGAATGGGATACCTGATTTTGTGAAACCAATAGGAACATTTTCATCTAAAAACCCTAGTGTTGCCAAAGATGGTAACATTGAGAATACAATGCAACCAATTATTGGTGATGGAGACTTTGCTGCACCCCCATCTCTTGGAAACTCAACACTGTCAGCCATGTGGTGGGAAAGTTTGTTGAACGAGAGCAATGAAAAAATCGGCTCTTGCTCTTTATTACAAGAGGAGAGAAATTCCATTTTGGAGTTACCAAACATTGAGAATTTTTTTATCGAAGGTTCAAGTACTTTTGGTGATTGCTATTGGGATTCCAACCTTTGTGGATTTGACTCTCATTTGGATATTTAA 807 0.368 MEKSKSRGVRKGAWTYEEDKLLKACIDKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPAVNREGFSEDEVDMILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLRKKMISRKSDEKKEKEKPKETIKAHEVHEVIKPQPRTFSSHSPLLNGIPDFVKPIGTFSSKNPSVAKDGNIENTMQPIIGDGDFAAPPSLGNSTLSAMWWESLLNESNEKIGSCSLLQEERNSILELPNIENFFIEGSSTFGDCYWDSNLCGFDSHLDI 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi261g00002 268 CDD SANT 67 109 IPR001005 -
Vivi261g00002 268 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vivi261g00002 268 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Vivi261g00002 268 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Vivi261g00002 268 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Vivi261g00002 268 FunFam Transcription factor MYB113 66 136 - -
Vivi261g00002 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 113 IPR017930 -
Vivi261g00002 268 SMART sant 63 111 IPR001005 -
Vivi261g00002 268 SMART sant 10 60 IPR001005 -
Vivi261g00002 268 Gene3D - 66 139 - -
Vivi261g00002 268 Gene3D - 2 64 - -
Vivi261g00002 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 62 IPR017930 -
Vivi261g00002 268 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 137 - -
Vivi261g00002 268 CDD SANT 13 58 IPR001005 -
Vivi261g00002 268 FunFam Myb transcription factor 11 63 - -
Vivi261g00002 268 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi261g00002 7 213 MYB Transcription Factor Family AT1G66370 50.450 5.69e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi261g00002 Myb_DNA-binding 8.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi261g00002 - K09422 tpra:123921946 348.977