Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi261g00001 ATGGAGGGAAAATCTTCTAATGAAGGTTCCAGTACCGGCAATGTCTCAGCAGACTCTTCTGATTCAACTGTTCAGCTCAATATTAAAACTTTAGAATCCCGCATCTACAGTTTTCAAGTTGAAAAAAATATACCCGTTTCCTTGTTCAAAGAAAAAATTGCTTGTGAAATAGGTGTACCGGTTAATCAGCAACGACTCATATTTAGAGGAAAAGTCCTCAAGGATGAACATGTCCTTTCTGAGTATCATGTTGAGAATGGGCATACGTTGCATTTAGTTGAAAGACAGCCAAATCCGCCTCAGACTTCTGGTGCGGGTTCCGTTGAGACAACTAGTACAAACAGTAACCGAGGAAACGGTGCTGGATCAGGAGCTCCTCGTAACCGTGTTGGCCAAATTTCACACAGCGTGGTTCTTGGGACTTTTAATGTGGGGGAACAAGTTGAAGGCACTGCTCAAGACCTTACTAGGGTTTGTTTATGCATTCTCTGCATCTATCTTCAGTATCTAATACTTATGCTTTCTATTAAGTTTTTTTGCTTTGGTTTTTTGTAA 555 0.4054 MEGKSSNEGSSTGNVSADSSDSTVQLNIKTLESRIYSFQVEKNIPVSLFKEKIACEIGVPVNQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNPPQTSGAGSVETTSTNSNRGNGAGSGAPRNRVGQISHSVVLGTFNVGEQVEGTAQDLTRVCLCILCIYLQYLILMLSIKFFCFGFL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi261g00001 184 FunFam Large proline-rich protein BAG6 16 109 - -
Vivi261g00001 184 Gene3D - 12 108 - -
Vivi261g00001 184 CDD Ubl_ubiquitin_like 26 93 - -
Vivi261g00001 184 PRINTS Ubiquitin signature 55 75 IPR019956 -
Vivi261g00001 184 PRINTS Ubiquitin signature 76 97 IPR019956 -
Vivi261g00001 184 PRINTS Ubiquitin signature 34 54 IPR019956 -
Vivi261g00001 184 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Vivi261g00001 184 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 159 - -
Vivi261g00001 184 MobiDBLite consensus disorder prediction 1 23 - -
Vivi261g00001 184 SMART ubq_7 24 95 IPR000626 GO:0005515
Vivi261g00001 184 MobiDBLite consensus disorder prediction 92 128 - -
Vivi261g00001 184 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Vivi261g00001 184 SUPERFAMILY Ubiquitin-like 19 100 IPR029071 -
Vivi261g00001 184 MobiDBLite consensus disorder prediction 95 122 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi261g00001 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.278 7.41e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi261g00001 - - vvo:131627819 310.457