Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi25g00001 ATGGGGTGTTCAGTATTTATGTTACTAGTTTTTTCTTCAATGTTTCTAGTTTTAAGCTCAAAAGGTGTATGTGGAAATGCTGAGCTGAAAGCACTTATGGATTTGAAACACAGTTTAGATCCAGAAGGGCATTTTCTGTCTTCATGGTCAACAAATGGTAACCCTTGTGATGAATCTTTTGAAGGTGTTGCTTGTAATGAAAAAGGTCAAGTAGCAAATGTTTCATTGCAAGGAAAAGGGCTTTCTGGTAAACTATCACCAGCCATTGGTGATCTCAAGCACTTGACAGGACTTTACTTGCATTACAACTCTCTATATGGTGAGATACCTAGAGAAATTGCTAACTTGACTGAGCTTAGTGATTTGTACTTGAATGTGAATCATTTGTCTGGTGAAATCCCTTCTGAGTTTGGCAAAATGGAGAGTCTACAAGTTTTGCAGCTTTGTTATAACCAACTAACAGGAAGCATTCCTACTCAGCTCGGCGATTTGAAGAAACTTAGTGTTCTTGCTCTTCAGTCGAACAAATTAGCTGGAGCTATCCCTGCTAGTTTAGGTGGCTTAGGAATGTTGATGAGGCTAGATTTGAGCTCTAATAATCTTTTTGGTTCAATTCCAACAAGACTTGCTGATGCTCCTTTTCTTCAAGTTCTTGATGTTCACAACAATACTCTTTCTGGAAATGTACCTCCCGCTTTGAAGAGACTAGATGATAAATTTGTGTATGAATACAATTTGGGACTATGTGGAGATGGATTTTCATCCTTGAAAGCTTGCAATGCCTCAGATCATGCCAATCCAAACAGGCCTGAACCTTATGGAGCAGGAGTTGATGTTAAGCCTAAAGAAATCCCAGAAACTGCAAATATAAAGTTGCCTTGCAACACAACTCGGTGCCAAAGCTCGTCAAAATCCAAGAAAACAGTGTCTATTACCGTTGGCCTAGTTCTGGCGACAATTGCAGTGTCAGCAGTAGGCATTCTAGCTTTCACAATGTATCGCCGGCGGAAGCAAAAGCTTGGTAGTGCCTTTGATATCACTGAAAGCCGTCTAAGCACCGATCAAACCAGAAGTATTTATCGGAAAAATGGATCTCCTTTGGTCAGTCTTGAGTATGCTAATGGATGGGACCCTTTGGCTGATAGTAGACATTTCAACGGAGATAAGCAAGATATGTTCTCGAGTTTCCGGTTCAACTTGGAGGAAGTGGAATCCGCGACTCAGTATTTCTCAGAGTTGAATCTGTTGGGTAAGAGTAACTTTAGTGCAACATATAAAGGAGTTCTAAGAGATGGATCTATTGTTGCTGTTAAGAGCATTAGTAAAACTAGTTGCAAATCAGATGAATCTGAATTTTTGAAGGGGTTGAACATTTTGACGTCGTTGAGGAATGATAATTTGGTGAAGTTGAGAGGATTTTGTTGTTCGAGGGGACGAGGGGAATGCTTCTTGATTTACGATTTTGTTTCAAATGGAAACTTATCGGGTTACCTTGATGTTAAGGAAGGTGAGGGTGAAGTCCTTGAATGGTCAACTAGAGTTTCGATCGTAAAAGGAATTGCTAAAGGCATATCATATTTGCATGCTTACAAAGCAAACAAACCAGCTCTTGTTCACCAAAACATCTCAGCCGAGAAAGTGCTCATCGATCAGCGACAGAATCCAGTACTATCCGATTCTGGTCTATATAAGCTTCTCACCAACGACATTGTCTTTTCTTCACTTAAGGGTAGTGCTGCAAAAGGTTACTTAGCTCCAGAATACACTACCACAGGCCGATTCACCGAAAAAAGCGACGTCTACGCATTTGGGATCCTTCTTTTCCAGGTACTCACTGGGAAGCATAAGATAACTAGCTCAATGCGCCTCGCCGCAGAATCCTTCAAATTCCAAGAATTCATTGACCAGAATCTCCACGGAAGATTCTTCGAATACGAGGCGGCTAAACTCGCAAGAATGGCATTGCTTTGCTCCCATGACTCTCCCTTTGAGAGGCCAACTATGGAAGCTATTGTTCAAGAACTTGCCAATTGTAGTAGTTGTCTTTGA 2049 0.4095 MGCSVFMLLVFSSMFLVLSSKGVCGNAELKALMDLKHSLDPEGHFLSSWSTNGNPCDESFEGVACNEKGQVANVSLQGKGLSGKLSPAIGDLKHLTGLYLHYNSLYGEIPREIANLTELSDLYLNVNHLSGEIPSEFGKMESLQVLQLCYNQLTGSIPTQLGDLKKLSVLALQSNKLAGAIPASLGGLGMLMRLDLSSNNLFGSIPTRLADAPFLQVLDVHNNTLSGNVPPALKRLDDKFVYEYNLGLCGDGFSSLKACNASDHANPNRPEPYGAGVDVKPKEIPETANIKLPCNTTRCQSSSKSKKTVSITVGLVLATIAVSAVGILAFTMYRRRKQKLGSAFDITESRLSTDQTRSIYRKNGSPLVSLEYANGWDPLADSRHFNGDKQDMFSSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSIVAVKSISKTSCKSDESEFLKGLNILTSLRNDNLVKLRGFCCSRGRGECFLIYDFVSNGNLSGYLDVKEGEGEVLEWSTRVSIVKGIAKGISYLHAYKANKPALVHQNISAEKVLIDQRQNPVLSDSGLYKLLTNDIVFSSLKGSAAKGYLAPEYTTTGRFTEKSDVYAFGILLFQVLTGKHKITSSMRLAAESFKFQEFIDQNLHGRFFEYEAAKLARMALLCSHDSPFERPTMEAIVQELANCSSCL 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi25g00001 682 Pfam Protein tyrosine and serine/threonine kinase 414 675 IPR001245 GO:0004672|GO:0006468
Vivi25g00001 682 FunFam Protein NSP-INTERACTING KINASE 2 489 679 - -
Vivi25g00001 682 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Vivi25g00001 682 FunFam Protein NSP-INTERACTING KINASE 2 381 488 - -
Vivi25g00001 682 ProSiteProfiles Protein kinase domain profile. 410 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi25g00001 682 Gene3D Transferase(Phosphotransferase) domain 1 489 681 - -
Vivi25g00001 682 Gene3D Phosphorylase Kinase; domain 1 381 488 - -
Vivi25g00001 682 Gene3D Ribonuclease Inhibitor 139 251 IPR032675 -
Vivi25g00001 682 SUPERFAMILY Protein kinase-like (PK-like) 390 675 IPR011009 -
Vivi25g00001 682 SUPERFAMILY L domain-like 23 234 - -
Vivi25g00001 682 FunFam Leucine-rich repeat receptor-like kinase 27 136 - -
Vivi25g00001 682 FunFam Protein NSP-INTERACTING KINASE 2 138 260 - -
Vivi25g00001 682 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 74 677 - -
Vivi25g00001 682 Gene3D Ribonuclease Inhibitor 27 138 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi25g00001 8 523 Miscellaneous Gene Families AT4G22730 57.116 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vivi25g00001 PK_Tyr_Ser-Thr 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi25g00001 - - gmx:100789253 1155.2