Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi258g00063 ATGCAATCTGGCGGCGCCGGCAGCGGTGGGCCCGGCCGGAATCCGGCAGGGCGGGCAGCGTCGACGTCGTCAGCGGCTGCGTCGCCGTCTTCTTCGTCTTCGGCGGCTTCTCATATGGGATTGGACTCATTGCAGCAGCAACAGCAGATGATGGGTTCTTCTAGACAGTCATTTCAACAGCAACTGCGTAGAAAACCTGAAGGGAATGAAGCGGTGCTGGCATATCAAGCAGGGCTTCAAGGAGTATTTGGGAATAACAATTACTCATCTTCTACTGCCATGCAACGGCCTCAGCAGTCTAGAAATTTTTTCGATTCAGCTCAACATGGACCCAACCAGGGTCAAGGCATTGAGCAGCAGATGCTAAGTCCTGTCCAACAAGCATATTATCAATATGCTCTCCAGAGTTCTCAACAAAAGTCTGCTTTGGCAATGCAGTCACAACAGCAATCTAAAATGGAAATGTCAGGTCACACATCTGTTAAGGATCAAGAAATGCGAATGGGAAATTTTAAATTGCAGGAGCTTATGGCAATGCAGGCAGGGAATCAGGGCCAAGGATCAACTTCTAGGAATTCATCTGAACATTTTTCTCATGGTGAAAAGAGGATAGAGCATGGACATCAGCTAGCTCCTGATAAGAAGAATGAAGAAAAGCCTTCAACTCATGGACCAGCCATTGGACATTTGATGCCTGTGCAAGCACTATCAACTCAGCAGAGCATGCCAAATGCTATGAACAACCAGATTGCTATGTCTGCTCAACTCCGAGCTATGCAGGCATGGGCACAAGAACGGAATATTGATCTATCACAACCTGCAAATGCTAACTTAGTGGCTCAGCTCATTCCCTTGATGCAATCAAAGATGATTCAACTACCAAACGAAAACATTACTAGCATTGGTGCTCAGTCCTCCTCTGTCCCCGTTTCAAACCAGCAGGTTACTTCTCCGGAAGTTGCAAGCGAGGGATCTGCTCGTGCTAATTCATCTAGCGGTGTGTCTGAACAGGTAGTTTCTGCAAAAGCCAGGCAGACAGCTCCACCCAGCCATTTGGGCTTACCCGTCAATGCTGGTGTGGCTGGAAACTCCAGTGACATGGCAGTGCAGCAGTTCAGTCTTCATAGTAGAGATGCTCAAGGATCTTCGAAGCAATCTGTTGTAGCTGGTAATGGAATGCCTTCTATGCATCCACATCAATCTTCTTCAAACATGAGCTTAGGTGCAGATAGTTCTTTGAATGCAAAACCTTCATCATCTGGATCTGGTTCGGAACCTGCAAAAGTGCAGTACAGCCAACAATTAATCCAACGTGCTTCCCAGGCTGGAGGGCTGATAAAGGAAGGAGGCTCCGGAAATTATACCAAGCCTCAAGGGGCACCGTCTCATACGGCTCAAAAACGAATTGGTTTTACCAAACATCAGCTCCATGTTCTTAAAGCACAGATACTAGCGTTTAGGCGGCTGAAGAAAGGTGAAAGTACACTTCCTCAAGAACTTCTTCAGGCCATTACTCCACCACCTCTTCATTTGCAAGTGAAGCAGCCAATTCACTCTTCAGGAGGCCAGAATCAAGATAAATCTGCGGGAAATACTGTGGTAGAACAAACAAGGAGGAATGATTCCAATACCAAGGATTCACAACCAATCACATCTCTTGATGGAAATTCTTCTAAGCAGGAAACTTTTGTAAGAGATCAGATATCCACTGGAGCAGCAGTTCATAGGCAAGCTATGCCTTCTGTGACAAAGGTCTCCATTGGAAAGGAAGAGCAGCAATCCATTGGATGCTCTGCTAAGTCAGACCAGGAAACTGAACATGGAATTAACAGAGCTCCTGTTAGAACTGAGTTAGCATTAGATAAAGGAAAGGCTGTTGCTTCCCAGGCTTCCATAACTGACATTGCACAAATTAATAAACCTGCACAGTCAAGCACTGTTGGCCAGCCAAAGGATACAGGACCCACCAAAAACTATCATGGGCCCCTATTTGATTTTCCTTTCTTCACTAGGAAACATGATTCCTTTGGGTCATCAATGATGGTAAACAACAACAACAATAATTTGTCACTGGCATATGATGTAAAAGAGCTTCTTTACGAGGAAGGCATGGAAGTTTTTAACAAGAGAAGAACAGAGAATCTAAAGAAGATTGAAGGATTACTTGCGGTAAACTTAGAGAGGAAAAGAATTAGGCCAGATCTTGTATTGAAGTTGCAAATTGAAGAGAAAAAGCTTCGCCTTATAGATCTTCAGGCTCGTTTAAGAGATGAGATTGATCAACAGCAACAGGAGATAATGGCAATGCCAGATAGGCCATATCGCAAGTTTGTTCGGCTGTGCGAACGTCAGCGTGTGGAACTCGCTAGACAAGTGCAGTCATCTCAGAAAGCTTTAAGGGATAAGCAACTGAAATCTATATTCCAATGGCGCAAGAAGCTTCTTGAAGTTCACTGGGCCATTCGTGATGCCCGTACTGCCCGTAATAGAGGGGTGGCCAAATATCACGAAAAGATGTTGAAAGAGTTCTCAAAACATAAGGACGATGACAGGAACAAGAGGATGGAGGCCTTAAAAAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAACAGACTAGCCTTCCAGGTGATGCTGCGGAGAGATACACTGTACTTTCAACTTTCTTAACTCAGACTGAAGAGTATCTCCAAAAATTAGGAAGTAAGATAACTTCTGCCAAAAATCATCAGGAAGTGGAGGAGGCAGCAAAAGCTGCAGCAGCTGCCGCACAATTACAGGGTCTTTCTGAAGAAGAAGTCAGAGCTGCAGCAGCTTGTGCTGGAGAAGAAGTGATGATTAGAAATCGTTTTACAGAGATGAATGCTCCAAACGATGGCTCATCTTCTGTCAGCAAGTATTACAACCTTGCTCATGCTGTGAATGAAAAAGTTTTAAGGCAGCCATCAATGTTGCGGGCTGGAACATTGAGAGAGTATCAGCTTGTTGGATTGCAATGGATGCTTTCTTTGTATAACAACAAGTTAAATGGAATCTTGGCTGATGAGATGGGTCTTGGTAAAACAGTCCAGGTTATGGCGTTAATTGCATACTTAATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATAGTTCCAAATGCCGTTTTGGTTAACTGGAAGAGTGAATTGCATACTTGGTTACCATCTGTGTCATGCATTTTTTATGTTGGAATGAAGGATCACCGGTCAAAATTATTTTCTCAAGAGGTTATGGCTATGAAATTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGACCGAGCAAAGCTTTCAAAAATTGATTGGAGGTATATCGTAATTGATGAAGCTCAGAGAATGAAGGATAGAGAGTCAGTTTTAGCTCGTGATCTTGATAGATATCGGTGTCACAGACGCCTGCTTCTGACAGGAACACCTTTACAGAATGATTTGAAGGAACTTTGGTCACTTTTAAATTTACTTCTTCCTGAGGTTTTTGACAATAAGAAAGCCTTTAATGATTGGTTCTCAAAACCATTTCAAAAGGAAGATCCCACCCAAAATGCAGAGGATGATTGGCTTGAGACAGAGAAGAAAGTTATCATTATCCATCGGCTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGCCGTGTTGAAGAGGTTGAAGGCTCGCTACCACCAAAGGTATCCATAGTTTTACGATGTAGAATGTCAGCCTTCCAGAGTGCCATTTATGACTGGATCAAATCAACCGGAACTCTCCGTCTTAATCCTGAGGAAGAGAAACTCCGGATGCAAAAAAGCCCGTTATACCAGGCAAAGCAGTATAAAACTTTAAATAATAGATGCATGGAGCTACGGAAAACTTGCAATCATCCATTGCTTAATTACCCATTTTTTAATGATTTATCTAAAGAGTTTATGGTGAAGTGTTGTGGGAAATTGTGGATGCTGGATAGGATTCTCATAAAACTTCAAAGAACCGGACATCGAGTTTTGCTGTTTAGTACCATGACAAAACTCCTAGACATATTGGAAGAGTACCTGCAATGGCGAAGACTTGTGTACAGAAGAATTGACGGGACAACAACTTTGGATGACCGTGAATCAGCTATAGTGGACTTCAATAGCCCTAATTCTGACTGTTTCATCTTCTTGCTTAGTATTAGGGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTAGTCATATATGATCCTGACCCAAACCCTAAAAATGAAGAGCAGGCCGTGGCTAGAGCTCATCGCATTGGACAAAAAAGAGAAGTTAAAGTTATCTACATGGAAGCTGTTGTTGACAAAATCTCTAGCCATCAGAAGGAGGATGAACGGAGAAGTGGAGGCACTATTGATATGGAGGATGAGCTTGCAGGTAAGGATCGTTATATAGGATCCATTGAGAGCCTCATAAGGAGCAATATTCAACAATATAAGATTGATATGGCTGACGAGGTTATTAATGCTGGACGTTTTGATCAAAGGACAACACATGAAGAGAGGCGTTTGACTTTGGAGACATTATTGCATGACGACGAACGGTGTCAAGAAACTGTCCACGATGTTCCTTCATTGCAGGAGGTAAATCGCATGATTGCTAGGAATGAAGAGGAAGTTGAATTGTTTGATCAAATGGATGAAGAAGAGGAATGGCTTGAGAAGATGACTCAGTATCATCAGGTGCCTAAGTGGCTTCGAGCCAGTACAAGAGATGTGAATGCTGCTATTGCTGCTTCATCCAAAAGATCATCAAAGAAAAACACTTTTTCGGGTGGTAATGTTGGCTTGGAATCCAGTGAAATGGGTTCTGAAAGGAGAAGGGGGCGACCAAAGGGAAAAAAGAATCCTAATTATAAAGAGTTGGAAGATGAAATTGGGGAATCCTCTGAAGAAATCTCTGAAGACAGAAATGAAGATTCTGCACATGAGGAAGATGATGGGTATTGTGGGGCTGATGGAGCTCAACCCGTGGATAAAGATAAGAATGTTACTCCTTCTGATGCTGAATATAAATTTCCTAGGTCTTCAGAAGGTGCTAGAAATATTCACGTGGTTAAAGAAATCGGTTCTTCAGCATCATCTGCAGACTGTCAAAGACCAACACAAACCGTGTCGCCATCAGTTTCTTCTCAGAAATTTGCTTCCCTGTCTGCGCTGGATGCCAAGCCAAGTTCGGTCTCAAAAAGGATGGGAGATGAGTTAGAAGAAGGGGAAATTGCAGTATCTGGTGAATCTCACATGTATCATCAACAATCCGGAAGTTGGATTCATGATCGTGATGAAGGTGAGGAAGAACAAGTTTTGCAGAAACCCAAGATTAAGCGTAAACGTAGTCTTCGTGTGCGGCCTCGTCACACCATGGAAAGGCTTGAGGAAAAGTCTGGCAGTGAGATGGCATCTCTTCAACGTGGAGAATCATCTCTTTTACTAAGCAATAAATATCAATTGCATACAAGGATCGCCCCTGAATCAAAATCATTTGAAGATTCCATTGCCAGTAAGCATGATAAGAAAGAACCTATATTTAAAAATAAGCGAAATTTACCTTCAAGGAAAGTACCTAATGCATCCAAATTACATGGCCTACCTAAGTCCAGTCGTTTGAACTGCACATCTTCTCCTTCAGAAGATAGTGGTGAACACTCTAGAGAAAGTTTGAAGGGGAAGCCTATCAATTTAAGTGGATCTGCAGCTCATGGCACTAAAATGGCTGAAATCATCCAGAGAGGGTGTAAAAATGTAATTAGCAAGCTTCAAAGGAGAATAGACAAGGAAGGCCATCAAATTGTACCTTTGCTGACAGATTTATGGAAGAGGATTGAGAATTCTGGGTTCTCTGGTGGTTCTAGGAACAAACTCTTGGATTTAAGAAAGATTGACCAGAGAATTGATAGACTGGAGTACAATGGAGTAATGGAGCTTGTGTTTGATGTACAATTCATGTTGAAGAGTGCGATGCATTTCTATGGGTACTCATATGAGGTAAGATCTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGACATCTTGAAAATCTCATTTTCCGATATTGATTTCGGAGAAGCAAGAAGTGCACTTTCTTTTTCTGGTCCAGTTTCTGCCAGTACGGTAGCATCCTCAAGACAAGTGACTGCTGGTCCAAGTAGTAAGAGAAAGAGAGGGAAGAATGATACGGAGACTGATCCATTCCCTACACAAAAGCCACTGCAACGTGGATCCACTTCCAATGGCGAAACTGGCAGGATCAAAGTCCAATTGCCTCAGAAGGTATCAAAAACTGGAAGTGGCAGTTCCAGTGCCAGGGAGCAACTTCAGCAGGATAGTCCTTCAATGCTTGTTCACCCAGGTGAACTGGTTGTATGCAAGAAGAAAAGAAATGAGAGAGAAAAACCATCAGGGAAGTTTAGGATTGGATCAACTGGTCCTATTTCACCCCCTAGCCTGGTTCTTGCTGTGAGAAGTCCGACTTCAGGTTCAGGTTCAGGTTCTACCCCTAGGACTGGCCATGCACAGAAACCAAATGGGTCTGGTGGGTTAGTTGGATGGGCAAATCCCGTGAAGCGGATGAGGACAGATTCTGGGAAGAGGAGACCAAGCCATATGTAG 6648 0.4311 MQSGGAGSGGPGRNPAGRAASTSSAAASPSSSSSAASHMGLDSLQQQQQMMGSSRQSFQQQLRRKPEGNEAVLAYQAGLQGVFGNNNYSSSTAMQRPQQSRNFFDSAQHGPNQGQGIEQQMLSPVQQAYYQYALQSSQQKSALAMQSQQQSKMEMSGHTSVKDQEMRMGNFKLQELMAMQAGNQGQGSTSRNSSEHFSHGEKRIEHGHQLAPDKKNEEKPSTHGPAIGHLMPVQALSTQQSMPNAMNNQIAMSAQLRAMQAWAQERNIDLSQPANANLVAQLIPLMQSKMIQLPNENITSIGAQSSSVPVSNQQVTSPEVASEGSARANSSSGVSEQVVSAKARQTAPPSHLGLPVNAGVAGNSSDMAVQQFSLHSRDAQGSSKQSVVAGNGMPSMHPHQSSSNMSLGADSSLNAKPSSSGSGSEPAKVQYSQQLIQRASQAGGLIKEGGSGNYTKPQGAPSHTAQKRIGFTKHQLHVLKAQILAFRRLKKGESTLPQELLQAITPPPLHLQVKQPIHSSGGQNQDKSAGNTVVEQTRRNDSNTKDSQPITSLDGNSSKQETFVRDQISTGAAVHRQAMPSVTKVSIGKEEQQSIGCSAKSDQETEHGINRAPVRTELALDKGKAVASQASITDIAQINKPAQSSTVGQPKDTGPTKNYHGPLFDFPFFTRKHDSFGSSMMVNNNNNNLSLAYDVKELLYEEGMEVFNKRRTENLKKIEGLLAVNLERKRIRPDLVLKLQIEEKKLRLIDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRVELARQVQSSQKALRDKQLKSIFQWRKKLLEVHWAIRDARTARNRGVAKYHEKMLKEFSKHKDDDRNKRMEALKNNDVDRYREMLLEQQTSLPGDAAERYTVLSTFLTQTEEYLQKLGSKITSAKNHQEVEEAAKAAAAAAQLQGLSEEEVRAAAACAGEEVMIRNRFTEMNAPNDGSSSVSKYYNLAHAVNEKVLRQPSMLRAGTLREYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIFYVGMKDHRSKLFSQEVMAMKFNVLVTTYEFIMYDRAKLSKIDWRYIVIDEAQRMKDRESVLARDLDRYRCHRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEDPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEEVEGSLPPKVSIVLRCRMSAFQSAIYDWIKSTGTLRLNPEEEKLRMQKSPLYQAKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKEFMVKCCGKLWMLDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTTLDDRESAIVDFNSPNSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDERRSGGTIDMEDELAGKDRYIGSIESLIRSNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDDERCQETVHDVPSLQEVNRMIARNEEEVELFDQMDEEEEWLEKMTQYHQVPKWLRASTRDVNAAIAASSKRSSKKNTFSGGNVGLESSEMGSERRRGRPKGKKNPNYKELEDEIGESSEEISEDRNEDSAHEEDDGYCGADGAQPVDKDKNVTPSDAEYKFPRSSEGARNIHVVKEIGSSASSADCQRPTQTVSPSVSSQKFASLSALDAKPSSVSKRMGDELEEGEIAVSGESHMYHQQSGSWIHDRDEGEEEQVLQKPKIKRKRSLRVRPRHTMERLEEKSGSEMASLQRGESSLLLSNKYQLHTRIAPESKSFEDSIASKHDKKEPIFKNKRNLPSRKVPNASKLHGLPKSSRLNCTSSPSEDSGEHSRESLKGKPINLSGSAAHGTKMAEIIQRGCKNVISKLQRRIDKEGHQIVPLLTDLWKRIENSGFSGGSRNKLLDLRKIDQRIDRLEYNGVMELVFDVQFMLKSAMHFYGYSYEVRSEARKVHDLFFDILKISFSDIDFGEARSALSFSGPVSASTVASSRQVTAGPSSKRKRGKNDTETDPFPTQKPLQRGSTSNGETGRIKVQLPQKVSKTGSGSSSAREQLQQDSPSMLVHPGELVVCKKKRNEREKPSGKFRIGSTGPISPPSLVLAVRSPTSGSGSGSTPRTGHAQKPNGSGGLVGWANPVKRMRTDSGKRRPSHM 2215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 2132 2148 - -
Vivi258g00063 2215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1226 1565 IPR027417 -
Vivi258g00063 2215 FunFam ATP-dependent helicase BRM 983 1231 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 181 227 - -
Vivi258g00063 2215 ProSiteProfiles QLQ domain profile. 470 506 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi258g00063 2215 PANTHER SNF2/RAD54 HELICASE FAMILY 701 1643 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 375 430 - -
Vivi258g00063 2215 SMART ultradead3 988 1177 IPR014001 -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 304 359 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 17 64 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 304 344 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 1798 1812 - -
Vivi258g00063 2215 SUPERFAMILY Bromodomain 1968 2025 IPR036427 GO:0005515
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 512 562 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 586 603 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 1767 1786 - -
Vivi258g00063 2215 FunFam ATP-dependent helicase BRM 1232 1442 - -
Vivi258g00063 2215 Gene3D - 1232 1442 IPR027417 -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 1841 1910 - -
Vivi258g00063 2215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 950 1222 IPR027417 -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 1591 1690 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 1638 1655 - -
Vivi258g00063 2215 FunFam Brahma1 1916 2039 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 1876 1890 - -
Vivi258g00063 2215 SMART bromo_6 1914 2029 IPR001487 GO:0005515
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 2164 2185 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 516 562 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 1 69 - -
Vivi258g00063 2215 CDD SF2_C_SNF 1318 1443 - -
Vivi258g00063 2215 Gene3D - 1916 2040 IPR036427 GO:0005515
Vivi258g00063 2215 SMART helicmild6 1349 1433 IPR001650 -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 1841 1860 - -
Vivi258g00063 2215 Coils Coil 1632 1652 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 2075 2124 - -
Vivi258g00063 2215 Gene3D - 983 1231 IPR038718 -
Vivi258g00063 2215 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1004 1169 IPR014001 -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 1704 1746 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 584 610 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 1704 1736 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 195 222 - -
Vivi258g00063 2215 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1323 1500 IPR001650 -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 1591 1611 - -
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 2051 2215 - -
Vivi258g00063 2215 Coils Coil 741 765 - -
Vivi258g00063 2215 Pfam Helicase conserved C-terminal domain 1323 1433 IPR001650 -
Vivi258g00063 2215 SMART QLQ_2 469 506 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 445 464 - -
Vivi258g00063 2215 Pfam QLQ 471 504 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi258g00063 2215 Pfam SNF2-related domain 995 1299 IPR000330 GO:0005524|GO:0140658
Vivi258g00063 2215 MobiDBLite consensus disorder prediction 1758 1818 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi258g00063 1329 1469 RAD5 or RAD16-like Gene Family AT5G43530 37.500 4.70e-17 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi258g00063 SNF2_N 9.3e-66 CL0023