Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi258g00060 ATGTTAGGAAGTGAGCAACCTTTGGATTTGTATAAACTGTTCATGGTGGTGAAGGATAAAGGTGGTTATGATGTTGTTTGTAAAAACAGGCTGTGGGATTTGGTTGGGGAAGAGTATGGGTTGGGTGTGAATGTTGGTTCGTCTGTTGAACTTGTTTACAGTAAGTATTTGAGTACTTTAGAGACGCCGTTGAAGAATGTAGTTGATGGTGAGTTTCCTAAGTGTGATTTAGTGGATGATAGAGTTAAGTTTGGCGAGCGGTTGATGGAGTTGCAGGCTGAGTTTTTGTTGGAGGATTATGGCGAGGAAGATGATGAACTCAAGGGTGTTTATGAATGTAGGAGGAAGTTTTGCGGTACTAATAGGGTGAAGGGCGTGAACCCTGAGTTGAATGCGGCTGAACTTGAAAGGGTTTATGACTACATAGATGGGAGGAAGTTATGTGATGCTAATGGAGTGAAGGATGCCAATCTTGAGTCTAATGCGGTTAAGAAAGTTAAGAGCGGAGGAGTTGTTGATGTGTGTATGCAGGAAAGTAGGACAGATGCTGTTGAAACAATGGAAGAGTTTGACGAGGGTAGAATAAAAGTAGTGGATGTATCCGAAACAGTAAACGATATGCCTGGGTTGTCAGATGGAAGCAAGAGGTGTGATAATGATGATGATGCTGATTTCTTAATATTGGATACGTCTAGTGTTAATAGAGAGAGCTTTGGTCGGAAAAGGAAGAGAGAGTCAATGTCAGAAATTCTAAGTTGGGTTACTAGCACTGCAAAGAATATTTGTGATCCTGTTGTAGGTTCAATGCCTGAAAAGTCAAAGTGGAAGTCTTACAGTAATGAAGAGACCTGGAAGAAGGTTTTGTTGTTTCGAGAAGCTGCCTTTTTGAAAAAGGATTTTGGATCAAACTGTGAAAAACTCACTTGGCTGGCTCAGAAGATGCATCCTTGCATGTATGATGATAGCCTTGGGGCAAATTACAATCTTAGACAGAGGATCAAATCTGACAATGGAGTTTTAGTTGGAAAATCTGCATCTATCTTTTCAAGGTTGCGAAGAACCTCAAGTGATACTGAAAGCAGTACCAAAAAAAAGTTACGTGCCTCCTGTTCTTCTGAATCAATTCTTGACACACCTCCCACAGTGAACATCCCTCTTGGGCCAAGCCATCAAGCTGAGGTGCCTGAATGGACTGGGACGACTCATGAGAGTGATTCTAAGTGGTTGGGAACCCAAGTATGGCCACTAAAAACTGTAAAATCCAGACTTTTGGATAGGGAATCTGTTGGAAATGGAAGACGCAATTCATGTAAATGCAGAGTACAAGGCTCTGTTGAGTGTGTTCGATTTCACATTGCTGAGAAAAGGGCTAAACTCAAGCTGGAATTAGGTGCGGCCTTTTATCAGTGGAGTCTAGATAAGATAGGTGAGGAAGTTAGGCGATGGTGGACACCGCAAGAAGAGAAGAAGTTCAAAGATGTAGTGAAATCGAATCCTGCTTCACTTGATAGACGTTTCTGGGATGATATTTTCAAAGCATTTCCTAAGAAGAGCAGGGAAAGTTTAGTCAACTACTACTTCAATGTCTTTCTTTTGCAGCGCAGAGCATACCAGAATAGGCATACTCCTGATAACATCGATAGCGATGATGATGAATCGGAGTTTACACCATTGAAGGGTGTTTTTGGACATCAAACTAGTAAATCACCCAGCTTCACCTTATTATCCCCTAAGAAGCCACAAACAAAGCCACAGTCGAAGGGAAGATAG 1770 0.4169 MLGSEQPLDLYKLFMVVKDKGGYDVVCKNRLWDLVGEEYGLGVNVGSSVELVYSKYLSTLETPLKNVVDGEFPKCDLVDDRVKFGERLMELQAEFLLEDYGEEDDELKGVYECRRKFCGTNRVKGVNPELNAAELERVYDYIDGRKLCDANGVKDANLESNAVKKVKSGGVVDVCMQESRTDAVETMEEFDEGRIKVVDVSETVNDMPGLSDGSKRCDNDDDADFLILDTSSVNRESFGRKRKRESMSEILSWVTSTAKNICDPVVGSMPEKSKWKSYSNEETWKKVLLFREAAFLKKDFGSNCEKLTWLAQKMHPCMYDDSLGANYNLRQRIKSDNGVLVGKSASIFSRLRRTSSDTESSTKKKLRASCSSESILDTPPTVNIPLGPSHQAEVPEWTGTTHESDSKWLGTQVWPLKTVKSRLLDRESVGNGRRNSCKCRVQGSVECVRFHIAEKRAKLKLELGAAFYQWSLDKIGEEVRRWWTPQEEKKFKDVVKSNPASLDRRFWDDIFKAFPKKSRESLVNYYFNVFLLQRRAYQNRHTPDNIDSDDDESEFTPLKGVFGHQTSKSPSFTLLSPKKPQTKPQSKGR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi258g00060 589 SMART ELM2_2 384 432 IPR000949 -
Vivi258g00060 589 MobiDBLite consensus disorder prediction 542 589 - -
Vivi258g00060 589 MobiDBLite consensus disorder prediction 542 557 - -
Vivi258g00060 589 CDD SANT 483 530 IPR001005 -
Vivi258g00060 589 SMART sant 479 532 IPR001005 -
Vivi258g00060 589 Pfam ARID/BRIGHT DNA binding domain 5 60 IPR001606 GO:0003677
Vivi258g00060 589 Gene3D - 2 70 IPR036431 GO:0003677
Vivi258g00060 589 MobiDBLite consensus disorder prediction 560 589 - -
Vivi258g00060 589 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Vivi258g00060 589 CDD ARID 6 61 - -
Vivi258g00060 589 SMART bright_3 2 66 IPR001606 GO:0003677
Vivi258g00060 589 Pfam Myb-like DNA-binding domain 483 529 IPR001005 -
Vivi258g00060 589 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 582 - -
Vivi258g00060 589 SUPERFAMILY ARID-like 5 66 IPR036431 GO:0003677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi258g00060 ARID 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi258g00060 - - tpra:123892530 890.952