Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi258g00057 ATGGGAGGTTGCTGTTGTTCTTCCAGAAAACATCATTTGCAAGGAACACCGGTTTATTACTATTGTCCGCCTACTTTTGAAGAGCGTGGATCTTCAACTTCTAATGACGGTACCGCTCCTTCACTCTCTGCTGGATTTCTGGTTGGACTAAATTTTGAAGGGGCAATACCTGATACGTTCCGATCTCCTCCTGTGCCTCTTCCTTATGACATTGTCTTCGGAGGTCCTGCGTCAACAGACTCCGAATCTGGCAGAGAAACTGTTAGTATGAGTAGTTTTGAAACTTCAATTACACGCGATGATGATATTGAAGAATCAGATTGTAAAGCTCAAACCAAATCTACACCTCTATCTCCAAAGAAGGAAAAACTATCAAAGTCGAATGGAACACAAGTATTGACGACAGAAGAAGAGGATGTCTGCCCAATTTGTCTCGAAGAATACGACGATGAGAATCCGAAAAATCTGACAAAATGTGAACATCATTTTCACCTATCTTGCATTCTTGAATGGATGGAAAGAAGTGACTCCTGTCCTAATTGCGACCAGGAGATGATATTTTGA 564 0.4149 MGGCCCSSRKHHLQGTPVYYYCPPTFEERGSSTSNDGTAPSLSAGFLVGLNFEGAIPDTFRSPPVPLPYDIVFGGPASTDSESGRETVSMSSFETSITRDDDIEESDCKAQTKSTPLSPKKEKLSKSNGTQVLTTEEEDVCPICLEEYDDENPKNLTKCEHHFHLSCILEWMERSDSCPNCDQEMIF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi258g00057 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 186 IPR013083 -
Vivi258g00057 187 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Vivi258g00057 187 SUPERFAMILY RING/U-box 135 185 - -
Vivi258g00057 187 MobiDBLite consensus disorder prediction 76 131 - -
Vivi258g00057 187 Pfam Ring finger domain 140 181 IPR001841 -
Vivi258g00057 187 FunFam Putative E3 ubiquitin-protein ligase RHB1A 117 186 - -
Vivi258g00057 187 MobiDBLite consensus disorder prediction 80 96 - -
Vivi258g00057 187 MobiDBLite consensus disorder prediction 110 131 - -
Vivi258g00057 187 SMART ring_2 141 181 IPR001841 -
Vivi258g00057 187 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 186 - -
Vivi258g00057 187 CDD RING-H2_AIRP1-like 137 185 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi258g00057 1 187 C3H Transcription Factor Family AT4G00335 56.684 2.13e-71 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi258g00057 - - gmx:100812687 306.219