Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi258g00054 ATGGGATTCCCGATAAGATACTCTGAACTTTCCGTTCCCAAACTCTTCCTTCACCTTCTCTCTCTCCTCGCCTTCCTAAGATCACTAGCCCTTTCCTTCCTCTCTCTCCTCCACCTCTCCGACATCTCCACCGCCACCTCATCAGAATCAAACTCCGACCATCCCACCCTCTCCGCAACCCTCATCCGAGAATTCCTCCCCGTCATCAGCTACCGTGACCTTGCCGAAGATTCGAAAACAGTAGAGTGTGCGGTGTGTCTGAACGAATTTGCCGGCGAGGAAGAGATCAGGTGTATGACGAATTGTAAACATATTTTTCACAAGAGATGTGTGGACAGTTGGATTGATCATGATCAGAAGACGTGTCCGCTTTGTAGGACCCAATTTGTACCTTATAAGAAAATGGAAGATTATAATCAACGGTTATGGAAAGCTTGTGAATCTGAATCTGAATGTGAATATGATGATGATTATGCTCTTTTTTCTCATCATGATGATGATCCCCTCATTGCTTCACTTTGA 522 0.4521 MGFPIRYSELSVPKLFLHLLSLLAFLRSLALSFLSLLHLSDISTATSSESNSDHPTLSATLIREFLPVISYRDLAEDSKTVECAVCLNEFAGEEEIRCMTNCKHIFHKRCVDSWIDHDQKTCPLCRTQFVPYKKMEDYNQRLWKACESESECEYDDDYALFSHHDDDPLIASL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi258g00054 173 SUPERFAMILY RING/U-box 82 139 - -
Vivi258g00054 173 ProSiteProfiles Zinc finger RING-type profile. 83 126 IPR001841 -
Vivi258g00054 173 SMART ring_2 83 125 IPR001841 -
Vivi258g00054 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 134 IPR013083 -
Vivi258g00054 173 Pfam Ring finger domain 82 126 IPR001841 -
Vivi258g00054 173 PANTHER - 19 147 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi258g00054 1 150 C3H Transcription Factor Family AT1G63840 41.772 1.29e-38 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi258g00054 K16281 - gmx:100813224 169.474