Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi258g00052 ATGGGATTCCCAATAAAATACCCTGAAGTTTCCGTCCCCAATCTCTTCCTTCACCTTCTCTCTCTCCTCGCCTTCCTAAGATCACTAGCCTTTTCCTTCCTCTCTCTCTTCCACCTCTCCGACATCTCCACCGCCACCTCGTCGGAATCACACTCCGACCATCCCACCCTCTCCGCAACCCTCATCCGCGAATTCCTCCCCGTCGTCAACTTCCGTGACCTTGCCGAAGATTCGAAATCGGTGGAGTGCGCGGTGTGTCTGAACGAATTTGCCGGCGAGGAAGAGATCAGGTGTATGACGAATTGTAAACATATTTTTCACAGGAAGTGTGTGGACAGTTGGATTGATCATGATCAGAAGACGTGTCCGCTTTGTAGGACCCAATTTATACCTTATCAGAATATGGAAGATTATAATCAACGGTTATCGGCGGCTTGTGAAACTGAATGTGAATATGATGATGATTATTCTCTTTTTTCTCAACACGAGGATGATCCCCTCATTGCTTCACTTTGA 516 0.4729 MGFPIKYPEVSVPNLFLHLLSLLAFLRSLAFSFLSLFHLSDISTATSSESHSDHPTLSATLIREFLPVVNFRDLAEDSKSVECAVCLNEFAGEEEIRCMTNCKHIFHRKCVDSWIDHDQKTCPLCRTQFIPYQNMEDYNQRLSAACETECEYDDDYSLFSQHEDDPLIASL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi258g00052 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 132 IPR013083 -
Vivi258g00052 171 ProSiteProfiles Zinc finger RING-type profile. 83 126 IPR001841 -
Vivi258g00052 171 SMART ring_2 83 125 IPR001841 -
Vivi258g00052 171 Pfam Ring finger domain 82 126 IPR001841 -
Vivi258g00052 171 SUPERFAMILY RING/U-box 82 138 - -
Vivi258g00052 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 136 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi258g00052 1 142 C3H Transcription Factor Family AT1G63840 44.000 2.09e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi258g00052 K16281 - gmx:100813224 163.696