Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi258g00042 ATGATGGAAGGAACAGAAGAGAGGGAGGAGAATGCTGCAGAACCGGAACCCAAAAACTCGGACGAGTCAACTCGTCCAGAAGATGACACCGAAGACGATGAAGAACCCGACGCGGTGGCCGTGGTTGAAGAGATCCAACGAGTCATCGAATCGGTTGTTCAATTCGGCGAATATCGAAGAATACAAAGGAAGGAATCGCACAATCTCGCTCGTCGTTTCAAACACATGTTGCCGCTTATGGAAGACCTTCGTGACCTTCATCAACCTGTTCCTCAGAACGGCGTTGCTTGGTTGGAGAGCCTTAGGGATGCGCTTTTGTTCGCTAAGGATTTGTTGAAATTGTGCAGCCAAGGAAGCAAAATTCACCTCGCATTGGAGGGTGAGGCTGTTATGAGCAAATTTCAGAAGGTTTATAAAAAATTAAGCCGAGCTTTTAAAGGTGTGCCTTTTGAAGAATTAGGAATCTCCGATGAAGTGAAAGAACAGCTTGAGCTAATGCACGTGCAACTCAGGCGGGCAAGGAGAAGGACTGATACACAAGACATAGAGTTAGCAATGGATATGATGGTTGTGTTCTCCGACGAAGATGATCGTAATGCCGATAGTGCTATAATCGAAAGGCTTGCGAAAAAGTTGGAACTTCACAGTGTTGAGGATCTTGAGGTAGAAACAGCGGCTGTTGGATACCTTGCTAGAGAAAGAAAGGGACAACAAGAAGAGAGCACACAGAAAATAATTGGCCTTCTTAACAAATTCAAAAGGATTGCAGGTATGGAAGAAACCAGTGTTGTTCTTGATAATGATCCTGCCATGCCTAATAAGATGTTTGAAAGAAGCACTTCTTTGGTCATCCCTCATGAGTTTCTATGTCCAATAACACTCGAAATCATGACCGATCCTGTTATTGTTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAATTCCAATCACAACTCTTGCCCTAAGACAAGGCAACCACTGGAACATCTTCAATTAGCACCAAACTGTGCCTTAAAGAACTTAATTGCTGAATGGTGTGAGAACCACAACTTCAAACTTCCAAAAATCTGCACTTCATGTCAAGAAACATCATCCACCGAGAACCAAGAAGCAATTCCATCTTTGGTTGAAAGCCTATGGTCAATCAACTTAGAACATCAAAGAAAGGCGGTCGAGAGAATACGCATGTTATCGAAAGAAAATTCAGAGAACAGAATTTTAGTTGCCGAGCACGGAGGAATACCGCCATTAGTACAATTACTATCCTATCCAGATTCAAAAATAAAGGAACATGCTGTTACAGCTCTTTTGAATCTATCAATTGATGAAGGTAACAAAAAGCTCATATCCAAAGAAGGTGCTATTCCAGCCATAATAGAAGTTCTGGAAAGTGGAAGTATTGTAGCTAAAGAAAACTCCGCCGCAGCTTTATTTAGCTTATCAATGATTGATGAAAACAAAGAGGTGGTTGGAATGTCAGATGGGATTCAACCTTTGGTAAATTTACTACAAAATGGAACAGTTAGAGGGAAAAAAGATGCAGCTACAGCACTTTTTAGCTTATCACTAAACCATGCAAATAAAGATAGAGCTATAAGAGCTGGAATTGTGACACCTTTACTTGGATTGTTAAGGGACAAAAACTTGGGAATGGTTGATGAAGCACTATCTATTATATTACTACTTGTGTTGAATTATGAAGGGAGACAAGAGATTGGACAGTTACCTTTTATTGAAACTCTTGTTGAGTTTACTAGAGAAGGGACTCCTAAGAATAAGGAATGTGCAGCTTCTGTTCTTCTTGAGTTGTGTACAAGTAATTCTTCTTTTACATTGGCAGCACTTCAGTTTGGAGTTTATGAGCATTTAGTTGAGATTAAAGAAAGTGGTACAAATAGAGCACAGAGGAAAGCTAATGCAATTTTAGAACTCATAAGCAAGAGTGAGCAAATTTAA 1971 0.4054 MMEGTEEREENAAEPEPKNSDESTRPEDDTEDDEEPDAVAVVEEIQRVIESVVQFGEYRRIQRKESHNLARRFKHMLPLMEDLRDLHQPVPQNGVAWLESLRDALLFAKDLLKLCSQGSKIHLALEGEAVMSKFQKVYKKLSRAFKGVPFEELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDEDDRNADSAIIERLAKKLELHSVEDLEVETAAVGYLARERKGQQEESTQKIIGLLNKFKRIAGMEETSVVLDNDPAMPNKMFERSTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFNSNHNSCPKTRQPLEHLQLAPNCALKNLIAEWCENHNFKLPKICTSCQETSSTENQEAIPSLVESLWSINLEHQRKAVERIRMLSKENSENRILVAEHGGIPPLVQLLSYPDSKIKEHAVTALLNLSIDEGNKKLISKEGAIPAIIEVLESGSIVAKENSAAALFSLSMIDENKEVVGMSDGIQPLVNLLQNGTVRGKKDAATALFSLSLNHANKDRAIRAGIVTPLLGLLRDKNLGMVDEALSIILLLVLNYEGRQEIGQLPFIETLVEFTREGTPKNKECAASVLLELCTSNSSFTLAALQFGVYEHLVEIKESGTNRAQRKANAILELISKSEQI 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi258g00042 656 MobiDBLite consensus disorder prediction 1 37 - -
Vivi258g00042 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 355 IPR013083 -
Vivi258g00042 656 ProSiteProfiles U-box domain profile. 283 357 IPR003613 GO:0004842|GO:0016567
Vivi258g00042 656 PANTHER U BOX DOMAIN-CONTAINING 63 650 - -
Vivi258g00042 656 Pfam Armadillo/beta-catenin-like repeat 489 527 IPR000225 GO:0005515
Vivi258g00042 656 Pfam Armadillo/beta-catenin-like repeat 406 445 IPR000225 GO:0005515
Vivi258g00042 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Vivi258g00042 656 FunFam RING-type E3 ubiquitin transferase 361 656 - -
Vivi258g00042 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 499 541 IPR000225 GO:0005515
Vivi258g00042 656 Coils Coil 156 176 - -
Vivi258g00042 656 Pfam U-box domain 284 354 IPR003613 GO:0004842|GO:0016567
Vivi258g00042 656 SMART arm_5 406 446 IPR000225 GO:0005515
Vivi258g00042 656 SMART arm_5 447 487 IPR000225 GO:0005515
Vivi258g00042 656 SMART arm_5 529 569 IPR000225 GO:0005515
Vivi258g00042 656 SMART arm_5 488 528 IPR000225 GO:0005515
Vivi258g00042 656 SMART arm_5 570 610 IPR000225 GO:0005515
Vivi258g00042 656 SUPERFAMILY RING/U-box 282 360 - -
Vivi258g00042 656 FunFam RING-type E3 ubiquitin transferase 280 357 - -
Vivi258g00042 656 Gene3D - 356 655 IPR011989 -
Vivi258g00042 656 FunFam RING-type E3 ubiquitin transferase 38 151 - -
Vivi258g00042 656 SUPERFAMILY ARM repeat 373 651 IPR016024 -
Vivi258g00042 656 SMART Ubox_2 287 350 IPR003613 GO:0004842|GO:0016567
Vivi258g00042 656 MobiDBLite consensus disorder prediction 1 25 - -
Vivi258g00042 656 Gene3D - 37 151 IPR036537 GO:0007166
Vivi258g00042 656 CDD RING-Ubox_PUB 285 337 IPR045210 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi258g00042 40 656 U-box Gene Family AT5G42340 61.264 0.0 723