Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi257g00012 ATGGCATCAGCGAAACGATGCCACTACGAAGTTCTCGGCCTCTCTCGAGACTCCTCGCCGGAAGAAATCCGATCCGGTTACCGGAAGCTCGCCCTCCAGCGCCATCCCGACAAGCTCGTCAAATCCGGCCTCTCTCAAGCCGAAGCAACCGCTCAATTTCAGGAGCTTCAGCACGCTTACGAAGTCCTCTCCGATCCAAAGGAACGCGCATGGTACGATTCTCATCGTTCCCAAATCCTCTTCTCCGATCCAAATTCCCACTCCAATTCCGTTGTCCCTGACCTCTTCTCGTTTTTCTCGAACACCGTTTATTCTAGTTATTCCGATACCGGTAAGGGTTTTTACAAGGTTTATTCCGATGTGTTTGATAAAATTCTGGCAAATGAGATCAATTTCGCTAGGAAATTAGGTTTAGGAGTTGATTCTGTTAGACAGGCTCCGCTTATGGGGAATTTAGATAGTCCTTATACGCAGGTTACCGCTTTTTATGGTTATTGGTTGGGATTTTCGACGGTGATGGATTTTTGCTGGGCGGATGAGTATGATGCGATGGCGGGTCCGAATAGGAAGTCGAGGCGGTTGATGGAGGAAGAGAATAATAAGGTGAGGAGGAAGGCGAAGAGGGAGTATAATGATACTGTGAGGAGGTTGGCTGATTTTATGAAGAAGAGGGACAAGAGAGTGATTGATATGAAGGTGAAGAAGAATTTGGAGATGGAGAAGAAGAAAGAAGAGGAGAAGGAGAAGAAGAGGAAGTTGGAGATGGAGAAACAGAAGAGGGCAATGGCTTATGAGGAGCCTGATTGGGCTAAGGTTGATGATGAAGAAGTTGAGGATTTGTTTGAGGATGATGAGTTTGAGGAGAAGAGAGATGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAAAACCATGAGCAGTCTAAGAAACATAAGGAGAAAGTTGCTGAGTTTAGGGATTCACTTGATGATGAAGAGGAGTTAGAAGTTGAGGTGGACGAGGAAAGTGAAAGTGAAAGAGATGGGGTGGAAGAAGAGAGATTACAAAGTGAGGAGGATGGAATTGAAGTTGATGATTTGGAGGAGAGGATTCGAGACAGTCTTAATGTTGCAGAAGAGGAGAGTGCAAATGGGGTTGAACTGAATGATGATGATGACAATGATGAATATTTTGATGTTTCACATGCAAAAGAGGGGGGAGAGGATGATGTATCAGTTGATTTAGATGACAATGATGACGACGGGGATGATGAAAATGGTGTTCTTGAAACAATGGTGGCAGGGCACAAAGAAAGAGTTGATTTTGATGATAATGATGATGAAGATGATGAGATTGATGTTCTCGAAGCAATGCTGGCTGGGCACAAGAGCAGAAAACCTGGTGCTTCAACATACATGCCCACGGTTTCTGTAACTCCCACTCAAATTGAGAGTGAAAATGAGAATGATGGGGTTGATGCTATGGAATATAACAACCGAAAGATCCCAAAAAAGAAACGTAGAGCCAAGAAAGAGAAGGGTGGGAAAAATGCGGAAGAATCTAATGTGCCTACCAATGGAAAATATGAGAAGAATATACACACTAATGGAAATGATGATTCTAATGCACAAGAGTCCAGTTCCCGATATTTCGATGATAATGAGGATAATGGGAGTAAAGAGAATGAGCAGCTGGGTAGAGATAATAAGAAGATTTCAAATCAACCAATTGATAAGAAAGGAACTTCAAAGGACACAAAAACCAAAGCAAAAATTTCATCCAGAGGGAGAAAAGCAAAGAATACTTCAAAGAATCTTGGCCATTACTGTGAGACGTGTGGAGAGGATTTTGAGTCAAGGAATAAATTACATAGGCATCTGGGAGAATCTGGGCACGCAGCAATGAAAAGTCGATAA 1920 0.4302 MASAKRCHYEVLGLSRDSSPEEIRSGYRKLALQRHPDKLVKSGLSQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSHSNSVVPDLFSFFSNTVYSSYSDTGKGFYKVYSDVFDKILANEINFARKLGLGVDSVRQAPLMGNLDSPYTQVTAFYGYWLGFSTVMDFCWADEYDAMAGPNRKSRRLMEEENNKVRRKAKREYNDTVRRLADFMKKRDKRVIDMKVKKNLEMEKKKEEEKEKKRKLEMEKQKRAMAYEEPDWAKVDDEEVEDLFEDDEFEEKRDEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLDDEEELEVEVDEESESERDGVEEERLQSEEDGIEVDDLEERIRDSLNVAEEESANGVELNDDDDNDEYFDVSHAKEGGEDDVSVDLDDNDDDGDDENGVLETMVAGHKERVDFDDNDDEDDEIDVLEAMLAGHKSRKPGASTYMPTVSVTPTQIESENENDGVDAMEYNNRKIPKKKRRAKKEKGGKNAEESNVPTNGKYEKNIHTNGNDDSNAQESSSRYFDDNEDNGSKENEQLGRDNKKISNQPIDKKGTSKDTKTKAKISSRGRKAKNTSKNLGHYCETCGEDFESRNKLHRHLGESGHAAMKSR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi257g00012 639 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 2 441 IPR044648 -
Vivi257g00012 639 ProSitePatterns Zinc finger C2H2 type domain signature. 297 319 IPR013087 -
Vivi257g00012 639 MobiDBLite consensus disorder prediction 550 593 - -
Vivi257g00012 639 MobiDBLite consensus disorder prediction 520 549 - -
Vivi257g00012 639 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Vivi257g00012 639 SMART dnaj_3 6 68 IPR001623 -
Vivi257g00012 639 ProSiteProfiles Zinc finger C2H2 type domain profile. 609 638 IPR013087 -
Vivi257g00012 639 SMART c2h2final6 609 633 IPR013087 -
Vivi257g00012 639 SMART c2h2final6 295 319 IPR013087 -
Vivi257g00012 639 SUPERFAMILY Chaperone J-domain 4 101 IPR036869 -
Vivi257g00012 639 Coils Coil 365 385 - -
Vivi257g00012 639 Gene3D Classic Zinc Finger 285 345 - -
Vivi257g00012 639 Gene3D DnaJ domain 1 91 IPR036869 -
Vivi257g00012 639 Coils Coil 229 259 - -
Vivi257g00012 639 MobiDBLite consensus disorder prediction 462 609 - -
Vivi257g00012 639 MobiDBLite consensus disorder prediction 411 427 - -
Vivi257g00012 639 Pfam Zinc-finger double-stranded RNA-binding 295 320 IPR022755 -
Vivi257g00012 639 SMART ZnF_U1_5 292 326 IPR003604 GO:0003676|GO:0008270
Vivi257g00012 639 ProSitePatterns Zinc finger C2H2 type domain signature. 611 633 IPR013087 -
Vivi257g00012 639 MobiDBLite consensus disorder prediction 471 489 - -
Vivi257g00012 639 Coils Coil 316 336 - -
Vivi257g00012 639 SUPERFAMILY beta-beta-alpha zinc fingers 287 337 IPR036236 -
Vivi257g00012 639 CDD DnaJ 7 65 IPR001623 -
Vivi257g00012 639 ProSiteProfiles Zinc finger C2H2 type domain profile. 295 324 IPR013087 -
Vivi257g00012 639 MobiDBLite consensus disorder prediction 330 349 - -
Vivi257g00012 639 MobiDBLite consensus disorder prediction 307 329 - -
Vivi257g00012 639 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Vivi257g00012 639 Pfam DnaJ domain 8 73 IPR001623 -
Vivi257g00012 639 PRINTS DnaJ domain signature 48 68 IPR001623 -
Vivi257g00012 639 PRINTS DnaJ domain signature 27 42 IPR001623 -
Vivi257g00012 639 PRINTS DnaJ domain signature 9 27 IPR001623 -
Vivi257g00012 639 MobiDBLite consensus disorder prediction 307 427 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi257g00012 3 639 C2H2 Transcription Factor Family AT1G74250 50.519 1.20e-180 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi257g00012 DnaJ 3.9e-21 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi257g00012 K09506 - gmx:100788305 746.117