Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi257g00005 ATGGCTTTCTTTGGTAAACTTGGGAATATTCTTCGACAAGCTACAAACAACAGGAAGATTATTTCGGATTTGCGTCCGACCCCATCTGTTTTCCAGGCTATAAGATGCATGTGCTCTGCTCCAACCACAAAGCTTTTTATAGGGGGTATTTCGTATTCGACTGATGAGCCAAGTTTGAGGGAAGCTTTTTCAAGATACGGCGAAGTGCTTGATGCTAGGGTAATTATGGATCGCGAAACCGGTAGATCCAGGGGATTTGGCTTTATCACATTCAATTCAGTTGAGGAGGCATCTAGTGCTATTCAGGCCTTGGATGGTCAGGACCTTCATGGTCGTCGAGTTAGGGTAAATTATGCTAATGAAAGGCCTCGCGTATATGGTGGTGGTGGCGGCGGTGGTTACGGTGGAGGTGGCTACGGTGGTGGTGGAGGTGGTTACGGTGGTGGTGGCGGCTATGGTGGAGGTTACGGGGGTGGTGGATATGGTGGAGGCAGCTCTGGGCCTGGTGGGAATTATGGGGGCAGTGATGCTGGCAATAACTATTCTCCTCCCAGTGGAAGTGGGGCGAATTATGGGAATGATGGCAGCAGTGGTTTTCCCGCTGACTTTGGCGGTGCAGTTAGTGATGCTGGCTCTGCTGGTGGATATGATGGAAGTGGGGGGTTAGGATTTGGCAGCAGTGGACACCTTGATAGCAATGACAGTGGCAATGTAAATGAGGATTTGGGAAATTTTAAGGATGACAATGATGACGACACTGATAATTTTGCCAAAAGGGCCTGA 783 0.4917 MAFFGKLGNILRQATNNRKIISDLRPTPSVFQAIRCMCSAPTTKLFIGGISYSTDEPSLREAFSRYGEVLDARVIMDRETGRSRGFGFITFNSVEEASSAIQALDGQDLHGRRVRVNYANERPRVYGGGGGGGYGGGGYGGGGGGYGGGGGYGGGYGGGGYGGGSSGPGGNYGGSDAGNNYSPPSGSGANYGNDGSSGFPADFGGAVSDAGSAGGYDGSGGLGFGSSGHLDSNDSGNVNEDLGNFKDDNDDDTDNFAKRA 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi257g00005 260 SMART rrm1_1 44 117 IPR000504 GO:0003723
Vivi257g00005 260 PRINTS Eggshell protein signature 156 166 - -
Vivi257g00005 260 PRINTS Eggshell protein signature 39 55 - -
Vivi257g00005 260 PRINTS Eggshell protein signature 129 144 - -
Vivi257g00005 260 PRINTS Eggshell protein signature 185 203 - -
Vivi257g00005 260 MobiDBLite consensus disorder prediction 217 260 - -
Vivi257g00005 260 MobiDBLite consensus disorder prediction 226 240 - -
Vivi257g00005 260 CDD RRM2_NsCP33_like 44 119 - -
Vivi257g00005 260 Gene3D - 13 140 IPR012677 -
Vivi257g00005 260 SUPERFAMILY RNA-binding domain, RBD 39 136 IPR035979 GO:0003676
Vivi257g00005 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 115 IPR000504 GO:0003723
Vivi257g00005 260 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 196 - -
Vivi257g00005 260 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 146 - -
Vivi257g00005 260 MobiDBLite consensus disorder prediction 241 260 - -
Vivi257g00005 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 121 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi257g00005 42 155 Eukaryotic Initiation Factors Gene Family AT4G34110 27.559 9.03e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi257g00005 K12741 - gmx:100799124 229.18