Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi255g00030 ATGAAGATGAGCACTACCTCTCCATTTTTCTTCCTTTTAATCATTGCCATTTTGTTCTTATCTCTAACAGCTTTTGGGGCTAATACTCTTCACCCGGACGAAAAAAAAGCTCTTGAAGATATAGCTATATCACTTGGTAAGAAGGATTGGAACTTCAACATAGATCCATGCAGCAACAAACCTAACTGGCTTACATCTCCCATATCCAAAGGAGTAGAAAATAATGTCACCTGTGACTGCTCTATTCCTGGTGACAAATTCTGCCATGTTATTTCAATAACTTTGAAAGGGCAAAATCTTCCCGGTACTCTCCCGCCAGGACTGACCAGGTTGCGTTACCTTCAAGTCATTGACCTCTCTCGCAATTACTTGAATGGTACAATTCCTAAAGAATGGGGCTCCATGATGAATATCAGTAAAATTGCTCTTCTCGGAAACCGATTAACGGGTTCAATACCAGCTGAGATTTCAAACATATCTACTCTCCAAACTTTGGAATTACATAACAATCAATTGTCTGGAAAGCTTCCTCCTGAGCTTGGGCATCTAACCCAAATTCAAACACTGCAACTTTCCTCTAACAATTTTACCGGAGAGCTACCTATGACATTCGTCAAGCTCACTGCATTACAAGAATTCCGAATTGAGGACAATCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGACAAATATTAATGCGCTAATGATTCAAGGAAGTGGATTAAGTGGGCCTATTCCTTCTGGAATTTCACTTTTGAGAAACTTAACTGACTTGAGAATTTGTGATTTGGATGGATATGAAGATGCACCTTTGCCACAACTTAATAGTATGACAAATTTAAATACTCTGGTTCTAAGGAACTGCAACATCAGTGGAGAACTGCCTGGTTATCTTGGGACTATGACATTATTAAAACACTTGGACCTCAGCTTTAACAAGTTAAGTGGAATAATTCCAGATTCCTATGCTAACATGAAGAGTTCGAATTACATATTTTTAACTGGAAATCTTCTCACTGGCCCCGTGCGTCGTTGGAGACATTATGTTGACACAGATCTCTCATACAATAATTTCAGCATCAGCCAAGTGAGTCAAAGATGTCAAGATGACAATGTGAACTTGTTTTCTACCTCATGGGCACACAATGACATAGAAACAGTTTCGTGTTTGAGATTTGAATGTCCCAAACCCTCATACTCCCTTTATATAAATTGTGGCGGAAAGCATGCAACAATCAACAAAACAAGTTATGACGAAGATTCGGACTTATCTAGCCCAGCTAGATTCCATGTCAGTTCAAATGGAAATTGGGCATTTAGCACCACTGGTGAATTCTTAGATAGTCCTGAGGAAAATTATTCCCCTAAAAATATAGCTAAACTTACTATGGTGGATGCTGAATTGTACATGAATGCACGTGTTTCTCCTATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAATGGAAACTACACAGTAAATCTACATTTTGCTGAAATAATGTTCACAGAAGATCAAACTTATGGTAGTCTTGGAAGGCGTGTATTTGATATCTACCTTCAGGGGAAGGCCGTGCAAAAGGACTTCAATATTGCCAAAGAAGCAGGAGGAGTTGGTAAGAAAATCATAAAACAGTTCAAAGATGTTGTTGTTTCTAGTAATACTTTGGAGATCCGTTTATATTGGGCTGGAAAAGGGACACAGTTTGTCCCAAATAAATCAGTATATGGTCCTCTTATATCGGCTATCTCAGTGGAATCTGACTCTCCACCTGGAACTGGAAGCATATCTGCAGGAGCTGTGGCTGGAATTGTGGTTGCAGCAACAATTGTTATCATTCTTGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGTAAAGAAAAACTCATTGGCAAGAGAGCTGAAGAGTTTAGACCTACCAACAGGTTTATTTACCTTAAGGCAAATCAAAGCAGCAACAAACAACTTTGATGATTCCAATAAGATTGGAGCAGGAGGATTTGGTCCTGTCTACAAGGGATGTTTATCCAACGGGACATTGATTGCAGTCAAGCAACTTTCTTCTAAATCAAGGCAGGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCCTTGCAACACCCTTATCTTGTTAAACTATATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGTTGATATATGAATACTTGGAAAACAATAGCCTTGCTCGTGCTTTATTTGGTCCAGAGAAAGAACAAATAAAATTAGATTGGTCTATACGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTGACATACCTACATGAAGAGTCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTGTTGCTTGACAAGGATCTCGACCCTAAGATATCTGATTTTGGTTTGGCCAAACTTGATGAGGAGGATAATACTCACATTAGCACTAGAATTGCTGGGACATATGGATATATGGCTCCTGAATATGCATTGCATGGTTATTTGACGGACAAAGCTGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATCGTTAGTGGAAGGAGCAACACCCTTTATCGGACAAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATATGTTGAAAGAGAGAGGCGACCTAATGGAGCTAGTAGACAGAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATGGTGATGATCAATGTGGCTCTCCTATGCACGAATGTCACTTCAAACCTTAGGCCCTCCATGTCGTCGGTGGTAAGTATGCTTGAAGGAAGGATTGTGGTTCCAGAGTTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGATGGAAGCAATGAGGCAGTATTACTATCATACGGAAGAAAATAAGATAAGCAAGTCACCATCACAAATTCAGAGTTTATTAAATGATGGGTCATGGACTGCTACATCTTCGACAGGTGAAGACCTTTATTCTGTCCACCCTGATTCTTCCTATTGGGAGAAAAGAAATTAA 3027 0.3928 MKMSTTSPFFFLLIIAILFLSLTAFGANTLHPDEKKALEDIAISLGKKDWNFNIDPCSNKPNWLTSPISKGVENNVTCDCSIPGDKFCHVISITLKGQNLPGTLPPGLTRLRYLQVIDLSRNYLNGTIPKEWGSMMNISKIALLGNRLTGSIPAEISNISTLQTLELHNNQLSGKLPPELGHLTQIQTLQLSSNNFTGELPMTFVKLTALQEFRIEDNQFSGKIPDYIQNWTNINALMIQGSGLSGPIPSGISLLRNLTDLRICDLDGYEDAPLPQLNSMTNLNTLVLRNCNISGELPGYLGTMTLLKHLDLSFNKLSGIIPDSYANMKSSNYIFLTGNLLTGPVRRWRHYVDTDLSYNNFSISQVSQRCQDDNVNLFSTSWAHNDIETVSCLRFECPKPSYSLYINCGGKHATINKTSYDEDSDLSSPARFHVSSNGNWAFSTTGEFLDSPEENYSPKNIAKLTMVDAELYMNARVSPISLTYYGFCLANGNYTVNLHFAEIMFTEDQTYGSLGRRVFDIYLQGKAVQKDFNIAKEAGGVGKKIIKQFKDVVVSSNTLEIRLYWAGKGTQFVPNKSVYGPLISAISVESDSPPGTGSISAGAVAGIVVAATIVIILVFGILWWKGCFVKKNSLARELKSLDLPTGLFTLRQIKAATNNFDDSNKIGAGGFGPVYKGCLSNGTLIAVKQLSSKSRQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEKEQIKLDWSIRQKICVGIARGLTYLHEESRLKVVHRDIKATNVLLDKDLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYALHGYLTDKADVYSFGVVALEIVSGRSNTLYRTKEEAFYLLDWAHMLKERGDLMELVDRRLGSDFNKKEAMVMINVALLCTNVTSNLRPSMSSVVSMLEGRIVVPEFVSDSSEVMDEKKMEAMRQYYYHTEENKISKSPSQIQSLLNDGSWTATSSTGEDLYSVHPDSSYWEKRN 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi255g00030 1008 SMART serkin_6 660 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00030 1008 SUPERFAMILY L domain-like 74 345 - -
Vivi255g00030 1008 Pfam Malectin domain 403 586 IPR021720 -
Vivi255g00030 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase 736 943 - -
Vivi255g00030 1008 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 36 200 - -
Vivi255g00030 1008 CDD STKc_IRAK 666 933 - -
Vivi255g00030 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 201 267 - -
Vivi255g00030 1008 Gene3D Ribonuclease Inhibitor 34 201 IPR032675 -
Vivi255g00030 1008 Gene3D Ribonuclease Inhibitor 267 386 IPR032675 -
Vivi255g00030 1008 Pfam Leucine rich repeat 281 341 IPR001611 GO:0005515
Vivi255g00030 1008 Pfam Protein tyrosine and serine/threonine kinase 664 931 IPR001245 GO:0004672|GO:0006468
Vivi255g00030 1008 ProSiteProfiles Protein kinase domain profile. 660 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00030 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Vivi255g00030 1008 Gene3D Transferase(Phosphotransferase) domain 1 736 942 - -
Vivi255g00030 1008 Gene3D - 401 591 - -
Vivi255g00030 1008 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 629 735 - -
Vivi255g00030 1008 SUPERFAMILY Protein kinase-like (PK-like) 643 947 IPR011009 -
Vivi255g00030 1008 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 401 591 - -
Vivi255g00030 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 964 - -
Vivi255g00030 1008 Gene3D Ribonuclease Inhibitor 202 266 IPR032675 -
Vivi255g00030 1008 Gene3D Phosphorylase Kinase; domain 1 627 735 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi255g00030 29 977 Receptor kinase-like Gene Family AT1G53420 55.047 0.0 1000
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi255g00030 PK_Tyr_Ser-Thr 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi255g00030 - - gmx:732563 1295.8