Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi255g00027 ATGAACACTTCCTCGCAGTGTATCTTCCTTTCACTCATTGCCATTTGGCTCATATCTATATCAGCTTTTGGAGCTACTACGATTCACCCCGATGAAAAGAAAGCTCTTCAAGATATAGCTAACTCACTTGGTAAGAAGGATTGGAATTTCAACACAGATCCATGCAGCAACTGGGTTACAAAGTTAGAGAACAATGTCACCTGTAACTGCTCTGTAGCTGGTGACAACTTCTGCCATGTTGTTACAATAATTTTGAACAAGCAAAATCTCCCGGGCACTCTCCCACCAGAACTGAACAGGCTGCGTTACCTTCAAATTATTGATCTCTCTCGCAATTACTTGAACGGTACAATTCCTAAAGAATGGGGCTCCATGACGAATCTTCTTAACATTATTCTCTCCGGAAATCGATTAACCGGTTCAATACCAAAGGAGATTGCTAATATATCTACTCTGATACAATTGAACTTGACAGGCAATCAAATGTCTGGAAATATTCCTTCTGAGCTTGGGAGTCTAACCCATATTCAAGCACTGCAACTTTCGTCTAACAATTTTACTCGAGAACTACCCGTAACATTGGCCAAGCTAAGTACACTGCTAGATTTCCGAATTTCAGACAACCAGTTGTCCGGAAAGATACCTGATTTTATTCAAAATTGGACAAATATCAGTACACTAATCATTCAAGGGAGTGGATTAAGTGGGCCGATTCCTTCCGAAATATCACTTTTGAGAAACTTAATTGAATTGAGAATTAGTGATTTGAATGGATCCGAATATGCACCCTTGCCACAACTTAGCAATATGATATCGTTAAACAGACTGGTTATGAGGAATTGCAACATCAATGGAAACCTACCCGAATCTATTGAGAATATGACAGCATTGAAACACTTAGATCTCAGCTTTAACAAATTAAATGGAACGATTCCGGATAGCTATGCTGACATGGACAGTTTGAATTTCGTGTTTTTAACTGGAAACCTTCTCACTGGACAAGTGCCTTCTCCTTGGGGAAAGAATGCATATGTAGATCTTTCATACAATAACTTCACCATCAATCAAGAGAGTCAGATATGTCAAAATGAAAGAGTGAACTTATTTTCTACTTCATGGGCACGCAATGACATAGGAACAAATTCGTGTTTGCGCTTTGAATGTCCCGAACACTTTTACTCCCTTCATATAAATTGTGGGGGAAATCAAGAAAAAGTCAACGGAACAAATTATGAAGATGATCAAGATTCATCTGGACCTGCCAGATTCGATGGCAAGGACAGTCCAACAGCAAAGTGGGCATTTAGCAGCACTGGCAAATTCATTGATAGTGGAACATTTGGAAACACTTATACTCCGGCAAATATCTCTAAACTTACTATGGTGGATGCTGAGTTGTACATGACTGCACGTGTTTCTCCTATTTCATTGACTTATTATGGGTTTTGCCTCGCAAATGGAAGCTACACAATAAATCTTCATTTTGCTGAAATAATATTCACAGACAATCAAACTTATGGTAGTCTTGGAAGGCGTGTATTTGATATCTATCTTCAGGGAATGCGCGTGCAAAAAGACTTCAATATTGCCGAAGAAGCTGGGGGAGTTGGTAAGAAAGTCACAAAACAGTTCAAAGATGTTAATGTTTCTAGTAATACTTTGGAGATCCGATTGTATTGGGCTGGAAAAGGGACACAGTATCTCCCAGATAAATCCGTATATGGTCCTCTTATATCAGCTATATCAGTGGAATCTGACTCTCCACCTAGAAGCCCTAGAACCCATAGAAGCAAACCTGCTGGAGCTGTGGTTGGAAGTGTGGTTGCAGCAACAATTATTATCATTCTAGTATTCGGTATACTCTGGCGGAAAGGATGTTTTGGAAAGAAAAACTCTTTAGCAAAAGAGCTGAAGAGTTTAGACCTTCAAACGGATCTATTTACCTTAAGACACATCAAATCAGCTACAAATAACTTTGATATTTCAAATAAGATTGGAGAAGGAGGATTTGGTCCAGTGTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTCAAACAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTCTAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCTTATCTTGTTAAACTCTATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATTTATGAATACTTGGAAAACAATAGTCTTGCCCGTGCTTTATTTGGTCCCGAGGAACACCAAATAAAACTAGATTGGTCAACTAGGAAGAAGATCTGTGTTGGTATTGCTAGTGGTTTGGCATTTCTTCATGAAGAATCAAGACTGAAGGTTGTTCATAGGGACATCAAGGCCACTAATGTGTTGCTTGATAAAGATCTCAAACCAAAGATATCTGATTTTGGTTTAGCCAGGCTTGATGACGAGGACAATACTCACATTAGCACTAGAATTGCGGGGACATATGGTTACATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATCGTTAGTGGAAGGAGCAACACCCTTTATCGGTCACAGGAGGAAACATTCTATCTTCTTGATTGGGCACATTTGATGAAAGAGAAAGGTGACTTAATGGAGCTAGTTGATAGAAGATTAGGATCAGATTTCAACAAAAAGGAAGCTATGGTGATGATCAATGTGGCTCTCCTATGCACGAATGTCACGTCAAACCTTAGGCCCTCCATGTCGTCGGTGGTAAGTATGCTCAAAGGTAGGACCGTGGTTCCAGAATTCGTTGCAGATTCAAGTGAAGTATTGGATGAAAAGAAGTTTGAAGTAATGAGGAAGTATTATTATCAGATTGAAGAAAATGAGAAAAGTAAGTCACAAACACAAAGTCAGAGTTTATCAATTGATGGGCCATGGACGGCTGCATCTTCATCGGCTGTAGACCTTTATCCAGTCCACCTTGATTCCTCCTATTGGGAGGAAAGAAATTAA 3024 0.3955 MNTSSQCIFLSLIAIWLISISAFGATTIHPDEKKALQDIANSLGKKDWNFNTDPCSNWVTKLENNVTCNCSVAGDNFCHVVTIILNKQNLPGTLPPELNRLRYLQIIDLSRNYLNGTIPKEWGSMTNLLNIILSGNRLTGSIPKEIANISTLIQLNLTGNQMSGNIPSELGSLTHIQALQLSSNNFTRELPVTLAKLSTLLDFRISDNQLSGKIPDFIQNWTNISTLIIQGSGLSGPIPSEISLLRNLIELRISDLNGSEYAPLPQLSNMISLNRLVMRNCNINGNLPESIENMTALKHLDLSFNKLNGTIPDSYADMDSLNFVFLTGNLLTGQVPSPWGKNAYVDLSYNNFTINQESQICQNERVNLFSTSWARNDIGTNSCLRFECPEHFYSLHINCGGNQEKVNGTNYEDDQDSSGPARFDGKDSPTAKWAFSSTGKFIDSGTFGNTYTPANISKLTMVDAELYMTARVSPISLTYYGFCLANGSYTINLHFAEIIFTDNQTYGSLGRRVFDIYLQGMRVQKDFNIAEEAGGVGKKVTKQFKDVNVSSNTLEIRLYWAGKGTQYLPDKSVYGPLISAISVESDSPPRSPRTHRSKPAGAVVGSVVAATIIIILVFGILWRKGCFGKKNSLAKELKSLDLQTDLFTLRHIKSATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWSTRKKICVGIASGLAFLHEESRLKVVHRDIKATNVLLDKDLKPKISDFGLARLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVSGRSNTLYRSQEETFYLLDWAHLMKEKGDLMELVDRRLGSDFNKKEAMVMINVALLCTNVTSNLRPSMSSVVSMLKGRTVVPEFVADSSEVLDEKKFEVMRKYYYQIEENEKSKSQTQSQSLSIDGPWTAASSSAVDLYPVHLDSSYWEERN 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi255g00027 1007 MobiDBLite consensus disorder prediction 408 427 - -
Vivi255g00027 1007 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 191 257 - -
Vivi255g00027 1007 Gene3D Ribonuclease Inhibitor 31 151 IPR032675 -
Vivi255g00027 1007 SUPERFAMILY L domain-like 75 353 - -
Vivi255g00027 1007 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 969 - -
Vivi255g00027 1007 FunFam Putative LRR receptor-like serine/threonine-protein kinase 735 942 - -
Vivi255g00027 1007 ProSiteProfiles Protein kinase domain profile. 659 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00027 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Vivi255g00027 1007 SUPERFAMILY Protein kinase-like (PK-like) 643 940 IPR011009 -
Vivi255g00027 1007 CDD STKc_IRAK 665 932 - -
Vivi255g00027 1007 SMART serkin_6 659 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00027 1007 Gene3D - 392 586 - -
Vivi255g00027 1007 Gene3D Ribonuclease Inhibitor 260 383 IPR032675 -
Vivi255g00027 1007 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 190 - -
Vivi255g00027 1007 Gene3D Ribonuclease Inhibitor 152 259 IPR032675 -
Vivi255g00027 1007 Pfam Protein tyrosine and serine/threonine kinase 661 930 IPR001245 GO:0004672|GO:0006468
Vivi255g00027 1007 Gene3D Phosphorylase Kinase; domain 1 626 734 - -
Vivi255g00027 1007 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 628 734 - -
Vivi255g00027 1007 Gene3D Transferase(Phosphotransferase) domain 1 735 942 - -
Vivi255g00027 1007 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 392 586 - -
Vivi255g00027 1007 Pfam Malectin domain 394 581 IPR021720 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi255g00027 25 962 Receptor kinase-like Gene Family AT1G53420 54.545 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi255g00027 PK_Tyr_Ser-Thr 6.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi255g00027 - - gmx:732563 1280