Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi255g00024 ATGAACACTTCCTCGCAGTGTATCTTCCTTTCACTCATTGCCATTTGGCTCATATCTATATCAGCTTTTGGAGCTACTACGATTCACCCCGATGAAAAGAAAGCTCTTCAAGATATAGCTAACTCACTTGGTAAGAAGGATTGGAATTTCAACACAGATCCATGCAGCAACTGGGTTACAAAGTTAGAGAACAATGTCACCTGTAACTGCTCTGTAGCTGGTGACAACTTCTGCCATGTTGTTACAATTATTCTCTCCGGAAATCGATTAACCGGTTCAATACCAAAGGAGATTGCTAATATATCTACTCTGATACAATTGAACTTGACAGGCAATCAAATGTCTGGAAATATTCCTTCTGAGCTTGGGAGTCTAACCCATATTCAAGCACTGCAACTTTCGTCTAACAATTTTACTCGAGAACTACCCGTAACATTGGCCAAGCTAAGTACACTGCTAGATTTCCGAATTTCAGACAACCAGTTGTCCGGAAAGATACCTGATTTTATTCAAAATTGGACAAATATCAGTACACTAATCATTCAAGGGAGTGGATTAAGTGGGCCGATTCCTTCCGAAATATCACTTTTGAGAAACTTAATTGAATTGAGAATTAGTGATTTGAATGGATCCGAATATGCACCCTTGCCACAACTTAGCAATATGATATCGTTAAACAGACTGGTTATGAGGAATTGCAACATCAATGGAAACCTACCCGAATCTATTGAGAATATGACAGCATTGAAACACTTAGATCTCAGCTTTAACAAATTAAATGGAACGATTCCGGATAGCTATGCTGACATGGACAGTTTGAATTTCGTGTTTTTAACTGGAAACCTTCTCACTGGACAAGTGCCTTCTCCTTGGGGAAAGAATGCATATGTAGATCTTTCATACAATAACTTCACCATCAATCAAGAGAGTCAGATATGTCAAAATGAAAGAGTGAACTTATTTTCTACTTCATGGGCACGCAATGACATAGGAACAAATTCGTGTTTGCGCTTTGAATGTCCCGAACACTTTTACTCCCTTCATATAAATTGTGGGGGAAATCAAGAAAAAGTCAACGGAACAAATTATGAAGATGATCAAGATTCATCTGGACCTGCCAGATTCGATGGCAAGGACAGTCCAACAGCAAAGTGGGCATTTAGCAGCACTGGCAAATTCATTGATAGTGGAACATTTGGAAACACTTATACTCCGGCAAATATCTCTAAACTTACTATGGTGGATGCTGAGTTGTACATGACTGCACGTGTTTCTCCTATTTCATTGACTTATTATGGGTTTTGCCTCGCAAATGGAAGCTACACAATAAATCTTCATTTTGCTGAAATAATATTCACAGACAATCAAACTTATGGTAGTCTTGGAAGGCGTGTATTTGATATCTATCTTCAGGGAATGCGCGTGCAAAAAGACTTCAATATTGCCGAAGAAGCTGGGGGAGTTGGTAAGAAAGTCACAAAACAGTTCAAAGATGTTAATGTTTCTAGTAATACTTTGGAGATCCGATTGTATTGGGCTGGAAAAGGGACACAGTATCTCCCAGATAAATCCGTATATGGTCCTCTTATATCAGCTATATCAGTGGAATCTGACTCTCCACCTAGAAGCCCTAGAACCCATAGAAGCAAACCTGCTGGAGCTGTGGTTGGAAGTGTGGTTGCAGCAACAATTATTATCATTCTAGTATTCGGTATACTCTGGCGGAAAGGATGTTTTGGAAAGAAAAACTCTTTAGCAAAAGCAGAGCTGAAGAGTTTAGACCTTCAAACGGATCTATTTACCTTAAGACACATCAAATCAGCTACAAATAACTTTGATATTTCAAATAAGATTGGAGAAGGAGGATTTGGTCCAGTGTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTCAAACAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTCTAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCTTATCTTGTTAAACTCTATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATTTATGAATACTTGGAAAACAATAGTCTTGCCCGTGCTTTATTTGGTCCCGAGGAACACCAAATAAAACTAGATTGGTCAACTAGGAAGAAGATCTGTGTTGGTATTGCTAGTGGTTTGGCATTTCTTCATGAAGAATCAAGACTGAAGGTTGTTCATAGGGACATCAAGGCCACTAATGTGTTGCTTGATAAAGATCTCAAACCAAAGATATCTGATTTTGGTTTAGCCAGGCTTGATGACGAGGACAATACTCACATTAGCACTAGAATTGCGGGGACATATGGTTACATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATCGTTAGTGGAAGGAGCAACACCCTTTATCGGTCACAGGAGGAAACATTCTATCTTCTTGATTGGGCACATTTGATGAAAGAGAAAGGTGACTTAATGGAGCTAGTTGATAGAAGATTAGGATCAGATTTCAACAAAAAGGAAGCTATGGTGATGATCAATGTGGCTCTCCTATGCACGAATGTCACGTCAAACCTTAGGCCCTCCATGTCGTCGGTGGTAAGTATGCTCAAAGGTAGGACCGTGGTTCCAGAATTCGTTGCAGATTCAAGTGAAGTATTGGATGAAAAGAAGTTTGAAGTAATGAGGAAGTATTATTATCAGATTGAAGAAAATGAGAAAAGTAAGTCACAAACACAAAGTCAGAGTTTATCAATTGATGGGCCATGGACGGCTGCATCTTCATCGGCTGTAGACCTTTATCCAGTCCACCTTGATTCCTCCTATTGGGAGGAAAGAAATTAA 2883 0.3944 MNTSSQCIFLSLIAIWLISISAFGATTIHPDEKKALQDIANSLGKKDWNFNTDPCSNWVTKLENNVTCNCSVAGDNFCHVVTIILSGNRLTGSIPKEIANISTLIQLNLTGNQMSGNIPSELGSLTHIQALQLSSNNFTRELPVTLAKLSTLLDFRISDNQLSGKIPDFIQNWTNISTLIIQGSGLSGPIPSEISLLRNLIELRISDLNGSEYAPLPQLSNMISLNRLVMRNCNINGNLPESIENMTALKHLDLSFNKLNGTIPDSYADMDSLNFVFLTGNLLTGQVPSPWGKNAYVDLSYNNFTINQESQICQNERVNLFSTSWARNDIGTNSCLRFECPEHFYSLHINCGGNQEKVNGTNYEDDQDSSGPARFDGKDSPTAKWAFSSTGKFIDSGTFGNTYTPANISKLTMVDAELYMTARVSPISLTYYGFCLANGSYTINLHFAEIIFTDNQTYGSLGRRVFDIYLQGMRVQKDFNIAEEAGGVGKKVTKQFKDVNVSSNTLEIRLYWAGKGTQYLPDKSVYGPLISAISVESDSPPRSPRTHRSKPAGAVVGSVVAATIIIILVFGILWRKGCFGKKNSLAKAELKSLDLQTDLFTLRHIKSATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWSTRKKICVGIASGLAFLHEESRLKVVHRDIKATNVLLDKDLKPKISDFGLARLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVSGRSNTLYRSQEETFYLLDWAHLMKEKGDLMELVDRRLGSDFNKKEAMVMINVALLCTNVTSNLRPSMSSVVSMLKGRTVVPEFVADSSEVLDEKKFEVMRKYYYQIEENEKSKSQTQSQSLSIDGPWTAASSSAVDLYPVHLDSSYWEERN 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi255g00024 960 MobiDBLite consensus disorder prediction 360 379 - -
Vivi255g00024 960 Pfam Protein tyrosine and serine/threonine kinase 614 883 IPR001245 GO:0004672|GO:0006468
Vivi255g00024 960 CDD STKc_IRAK 618 885 - -
Vivi255g00024 960 Gene3D - 344 538 - -
Vivi255g00024 960 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 142 209 - -
Vivi255g00024 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 734 746 IPR008271 GO:0004672|GO:0006468
Vivi255g00024 960 Gene3D Transferase(Phosphotransferase) domain 1 688 895 - -
Vivi255g00024 960 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 83 922 - -
Vivi255g00024 960 Gene3D Ribonuclease Inhibitor 30 196 IPR032675 -
Vivi255g00024 960 Pfam Malectin domain 346 533 IPR021720 -
Vivi255g00024 960 ProSiteProfiles Protein kinase domain profile. 612 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00024 960 SUPERFAMILY L domain-like 60 306 - -
Vivi255g00024 960 Gene3D Phosphorylase Kinase; domain 1 578 687 - -
Vivi255g00024 960 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 344 538 - -
Vivi255g00024 960 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 581 687 - -
Vivi255g00024 960 SMART serkin_6 612 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00024 960 FunFam Putative LRR receptor-like serine/threonine-protein kinase 688 895 - -
Vivi255g00024 960 SUPERFAMILY Protein kinase-like (PK-like) 596 893 IPR011009 -
Vivi255g00024 960 Gene3D Ribonuclease Inhibitor 197 335 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi255g00024 80 915 Receptor kinase-like Gene Family AT1G53420 56.635 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi255g00024 PK_Tyr_Ser-Thr 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi255g00024 - - gmx:732563 1193.72