Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi255g00023 ATGAACACTACCTTTCAATTTTTCTCCCTTTTCGTCATTGCCATTTGGTTCATATCTCTTACAGCTTTTGGAGCTGCTACTATTCACCCCGACGAAAAGAAAGCTCTTGAAGATATAGCTAAATCACTTGGTAAGAAGGATTGGAACTTCAACATAGATCCATGCAGCAACAAACCTAACTGGACTATGGGTGAGCCTCCCAATCGCAGATTGGATATCGTACAGAGCAATGTTTACTGTAACTGCTCTATTGCCGGTGACAATTTCTGCCATGTTATTTCAATAACTTTGAAAGGGCAAAATCTTCCTGGCACTCTCCCACCAAGACTGACCAGGTTGCGTTACCTTCAAACAATTGACCTCTCTCGCAATTATTTGCATGGTACAATTCCAAAACAATGGGGCTCCATGATGAATATTAGTAAAATTGCTCTTCCAGTAAACCGATTAACGGGTTCAATACCAGCTGAGATTGCAAACATATCTACTCTCCAAAATTTGGAGTTATGGAACAATCAGTTGTCAGGAAATCTTCCTCCTGAACTTGGGTATCTAACCCAAATTCAAACACTGCGAGTTTCCTCTAACAATTTTACTGGAGAACTACCTGTGACATTGGCCAAGCTCATTACATTGCTGGATTTCCGAATTGAGGACAATCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGAAAAGTATACAAAAACTAATGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCACTCTTGACAAACTTAACTAACTTGAGAATTAGTGATTTGAATGGATCTGACTATGCACCTTTGCCACAACTTAATAATCTGACGTCATTAGAAAAACTGATTCTAAGGAATTGCAACATTAACGGGACGCTACCTAATTATCTTAGGAATATGACAACATTAAAGCATTTAGACCTCAGCTTTAACAACTTAAGTGGAATAATTCCTTCGACCTATGCTTACCTAAACAACTTGACATACATAATTTTAACTGGAAACCTTCTCACTGGATCAATGCCTCCTTGGTCAACAAAAGTCAACGTAGACCTTTCATACAATAACTTCAGCTTAAGCCAAGTGAGTCAGATATGTCAAAATGATAAAGTGAACTTGTTTTCTACCTCATGGGCACGCAATGACATAGGAACAACTTCGTGTTTGAGCTTTGAATGTCCCAAACCCTCAAACTCCCTTTATATAAATTGTGGTGGAAATCAAGCAAAAGTCAACAGAACAACCTATGATGGTGATTCAGATTCATCTGGACCAGCTAGATTCCATGCCAGTCCAACAGGAAAATGGGCATCTAGCACCACTGGTGCATTCATTGATAGTGATCAACTTGGAGCAACTTATTATTCCACAAAATATACCTCTACACTTACTATGGTGGATGCTGAATTGTACATGACTGCGCGCGTTTCTCCTATTTCTTTGACTTATTATGGATTTTGCCTGGAAAATGGAAGCTACACAGTAAATCTACATTTTGCTGAAATAATGATCAGAGATGATCAAACCTATGGTAGTCTTGGAAGGCGTGTATTTGATATCTACCTTCAGGGAAAGGCAGTGCAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGTAAGAAAATTGTAAAACAGTTCAATGTTGTTGTTACTAGTAATACCTTGGAGATCCGATTGTATTGGGCTGGAAAAGGGACACAGTTTCTCCCTAATAGATCAGTATACGGTCCTCTTATATCAGCTATATCAGTTGAAACTGCAGACTCTCCACATGGAAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGTTGCAGCAACAGTTATTATCATTCTAGTATTTGGTACACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAATTCATTAGCAAAAGAGCTGGAGAGTTTAGACCTACACACGGGTTTATTTACCTTAAGACAAATCAAAGCAGCCACAAATAACTTTGATCTTTCCAATAAGATTGGAGAAGGAGGGTTTGGTCCCGTGTACAAGGGATGTTTACCCAATGGGACATTAATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAGCATCCTTATCTTGTTAAACTCTATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTTTAGCTCGTGCTTTATTTGGTCCAGAAGAACATCAAATAAGATTAGATTGGTCAACTAGGAAGAAGATCTGTGTTGGTATTGCTAGAGGATTGGCATACCTTCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAAGCAACTAATGTGTTGCTTGATAAAGATCTTGACCCAAAGATATCTGATTTTGGTTTGGCCAGACTTGATGAGGAGGAGAACACTCACATTAGCACTAGAATTGCTGGGACCTACGGATATATGGCTCCTGAGTACGCAATGCATGGTTATTTGACGGACAAAGCAGACGTTTATAGTTTTGGAATTGTTGTCTTGGAAATCATTAGTGGAAAGAACAACACCCTCTATCGGTCAAAGGAGGAGGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAGGAGAGGGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGAGCAGATTTCAACAAAAAGGAAGCTATGGTGGTAATAAATGTGGCTCTCCTATGCACGAATGTAACTTCAAACCTTAGGCCCTCCATGTCGTCGGTGGTAAGTTACCTTGAAGGAAGGACTATGGTTCCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGATGGAAGTAATGAGGAAGTATTACTATCAGATGGAAGAAAATACCTCACAAAGTCAGCGTATATTAAATGACGGGTCATGGACTGCTACATCTTCATCAGCTGTAGACCTTTATCCTGTTCACCTTGATTCTTCCTATTGGGAGGAAAGAAATTAA 3021 0.3919 MNTTFQFFSLFVIAIWFISLTAFGAATIHPDEKKALEDIAKSLGKKDWNFNIDPCSNKPNWTMGEPPNRRLDIVQSNVYCNCSIAGDNFCHVISITLKGQNLPGTLPPRLTRLRYLQTIDLSRNYLHGTIPKQWGSMMNISKIALPVNRLTGSIPAEIANISTLQNLELWNNQLSGNLPPELGYLTQIQTLRVSSNNFTGELPVTLAKLITLLDFRIEDNQFSGKIPDYIQNWKSIQKLMIQGSGLSGPIPSGISLLTNLTNLRISDLNGSDYAPLPQLNNLTSLEKLILRNCNINGTLPNYLRNMTTLKHLDLSFNNLSGIIPSTYAYLNNLTYIILTGNLLTGSMPPWSTKVNVDLSYNNFSLSQVSQICQNDKVNLFSTSWARNDIGTTSCLSFECPKPSNSLYINCGGNQAKVNRTTYDGDSDSSGPARFHASPTGKWASSTTGAFIDSDQLGATYYSTKYTSTLTMVDAELYMTARVSPISLTYYGFCLENGSYTVNLHFAEIMIRDDQTYGSLGRRVFDIYLQGKAVQKDFNIAEEAGGVGKKIVKQFNVVVTSNTLEIRLYWAGKGTQFLPNRSVYGPLISAISVETADSPHGSISAGAVVGIVVAATVIIILVFGTLWWKGCFGKKNSLAKELESLDLHTGLFTLRQIKAATNNFDLSNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIRLDWSTRKKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLDPKISDFGLARLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIISGKNNTLYRSKEEAFYLLDWAHLLKERGDLMELVDRRLGADFNKKEAMVVINVALLCTNVTSNLRPSMSSVVSYLEGRTMVPEFVSDSSEVMDEKKMEVMRKYYYQMEENTSQSQRILNDGSWTATSSSAVDLYPVHLDSSYWEERN 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi255g00023 1006 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 202 - -
Vivi255g00023 1006 FunFam Putative LRR receptor-like serine/threonine-protein kinase 739 946 - -
Vivi255g00023 1006 Gene3D - 404 596 - -
Vivi255g00023 1006 Pfam Protein kinase domain 665 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00023 1006 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 972 - -
Vivi255g00023 1006 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 738 - -
Vivi255g00023 1006 Gene3D Ribonuclease Inhibitor 273 388 IPR032675 -
Vivi255g00023 1006 CDD STKc_IRAK 669 936 - -
Vivi255g00023 1006 ProSiteProfiles Protein kinase domain profile. 663 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00023 1006 SUPERFAMILY L domain-like 69 368 - -
Vivi255g00023 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Vivi255g00023 1006 Pfam Malectin domain 406 590 IPR021720 -
Vivi255g00023 1006 SUPERFAMILY Protein kinase-like (PK-like) 646 948 IPR011009 -
Vivi255g00023 1006 Gene3D Ribonuclease Inhibitor 204 272 IPR032675 -
Vivi255g00023 1006 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 203 269 - -
Vivi255g00023 1006 SMART serkin_6 663 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00023 1006 Gene3D Ribonuclease Inhibitor 31 203 IPR032675 -
Vivi255g00023 1006 Pfam Leucine rich repeat 284 343 IPR001611 GO:0005515
Vivi255g00023 1006 Gene3D Transferase(Phosphotransferase) domain 1 739 955 - -
Vivi255g00023 1006 Gene3D Phosphorylase Kinase; domain 1 631 738 - -
Vivi255g00023 1006 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 403 595 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi255g00023 25 977 Receptor kinase-like Gene Family AT1G53420 53.583 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi255g00023 Pkinase 5.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi255g00023 - - gmx:732563 1294.64