Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi255g00022 ATGAACACTACCTTTCAATTTTTCTCCCTTTTCGTCATTGCCATTTGGTTCATATCTCTTACAGCTTTTGGAGCTGCTACTATTCACCCCGACGAAAAGAAAGCTCTTGAAGATATAGCTAAATCACTTGGTAAGAAGGATTGGAACTTCAACATAGATCCATGCAGCAACAAACCTAACTGGACTATGGGTGAGCCTCCCAATCGCAGATTGGATATCGTACAGAGCAATGTTTACTGTAACTGCTCTATTGCCGGTGACAATTTCTGCCATGTTATTTCAATAACTTTGAAAGGGCAAAATCTTCCTGGCACTCTCCCACCAAGACTGACCAGGTTGCGTTACCTTCAAACAATTGACCTCTCTCGCAATTATTTGCATGGTACAATTCCAAAACAATGGGGCTCCATGATGAATATTAGTAAAATTGCTCTTCCAGTAAACCGATTAACGGGTTCAATACCAGCTGAGATTGCAAACATATCTACTCTCCAAAATTTGGAGTTATGGAACAATCAGTTGTCAGGAAATCTTCCTCCTGAACTTGGGTATCTAACCCAAATTCAAACACTGCGAGTTTCCTCTAACAATTTTACTGGAGAACTACCTGTGACATTGGCCAAGCTCATTACATTGCTGGATTTCCGAATTGAGGACAATCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGAAAAGTATACAAAAACTAATGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCACTCTTGACAAACTTAACTAACTTGAGAATTAGTGATTTGAATGGATCTGACTATGCACCTTTGCCACAACTTAATAATCTGACGTCATTAGAAAAACTGATTCTAAGGAATTGCAACATTAACGGGACGCTACCTAATTATCTTAGGAATATGACAACATTAAAGCATTTAGACCTCAGCTTTAACAACTTAAGTGGAATAATTCCTTCGACCTATGCTTACCTAAACAACTTGACATACATAATTTTAACTGGAAACCTTCTCACTGGATCAATGCCTCCTTGGTCAACAAAAGTCAACGTAGACCTTTCATACAATAACTTCAGCTTAAGCCAAGTGAGTCAGATATGTCAAAATGATAAAGTGAACTTGTTTTCTACCTCATGGGCACGCAATGACATAGGAACAACTTCGTGTTTGAGCTTTGAATGTCCCAAACCCTCAAACTCCCTTTATATAAATTGTGGTGGAAATCAAGCAAAAGTCAACAGAACAACCTATGATGGTGATTCAGATTCATCTGGACCAGCTAGATTCCATGCCAGTCCAACAGGAAAATGGGCATCTAGCACCACTGGTGCATTCATTGATAGTGATCAACTTGGAGCAACTTATTATTCCACAAAATATACCTCTACACTTACTATGGTGGATGCTGAATTGTACATGACTGCGCGCGTTTCTCCTATTTCTTTGACTTATTATGGATTTTGCCTGGAAAATGGAAGCTACACAGTAAATCTACATTTTGCTGAAATAATGATCAGAGATGATCAAACCTATGGTAGTCTTGGAAGGCGTGTATTTGATATCTACCTTCAGGGAAAGGCAGTGCAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGTAAGAAAATTGTAAAACAGTTCAATGTTGTTGTTACTAGTAATACCTTGGAGATCCGATTGTATTGGGCTGGAAAAGGGACACAGTTTCTCCCTAATAGATCAGTATACGGTCCTCTTATATCAGCTATATCAGTTGAAACTGACTCTCCACATGGAAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGTTGCAGCAACAGTTATTATCATTCTAGTATTTGGTACACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAATTCATTAGCAAAAGAGCTGGAGAGTTTAGACCTACACACGGGTTTATTTACCTTAAGACAAATCAAAGCAGCCACAAATAACTTTGATCTTTCCAATAAGATTGGAGAAGGAGGGTTTGGTCCCGTGTACAAGGGATGTTTACCCAATGGGACATTAATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAGCATCCTTATCTTGTTAAACTCTATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTTTAGCTCGTGCTTTATTTGGTCCAGAAGAACATCAAATAAGATTAGATTGGTCAACTAGGAAGAAGATCTGTGTTGGTATTGCTAGAGGATTGGCATACCTTCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAAGCAACTAATGTGTTGCTTGATAAAGATCTTGACCCAAAGATATCTGATTTTGGTTTGGCCAGACTTGATGAGGAGGAGAACACTCACATTAGCACTAGAATTGCTGGGACCTACGGATATATGGCTCCTGAGTACGCAATGCATGGTTATTTGACGGACAAAGCAGACGTTTATAGTTTTGGAATTGTTGTCTTGGAAATCATTAGTGGAAAGAACAACACCCTCTATCGGTCAAAGGAGGAGGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAGGAGAGGGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGAGCAGATTTCAACAAAAAGGAAGCTATGGTGGTAATAAATGTGGCTCTCCTATGCACGAATGTAACTTCAAACCTTAGGCCCTCCATGTCGTCGGTGGTAAGTTACCTTGAAGGAAGGACTATGGTTCCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGATGGAAGTAATGAGGAAGTATTACTATCAGATGGAAGAAAATACCTCACAAAGTCAGCGTATATTAAATGACGGGTCATGGACTGCTACATCTTCATCAGCTGTAGACCTTTATCCTGTTCACCTTGATTCTTCCTATTGGGAGGAAAGAAATTAA 3018 0.3917 MNTTFQFFSLFVIAIWFISLTAFGAATIHPDEKKALEDIAKSLGKKDWNFNIDPCSNKPNWTMGEPPNRRLDIVQSNVYCNCSIAGDNFCHVISITLKGQNLPGTLPPRLTRLRYLQTIDLSRNYLHGTIPKQWGSMMNISKIALPVNRLTGSIPAEIANISTLQNLELWNNQLSGNLPPELGYLTQIQTLRVSSNNFTGELPVTLAKLITLLDFRIEDNQFSGKIPDYIQNWKSIQKLMIQGSGLSGPIPSGISLLTNLTNLRISDLNGSDYAPLPQLNNLTSLEKLILRNCNINGTLPNYLRNMTTLKHLDLSFNNLSGIIPSTYAYLNNLTYIILTGNLLTGSMPPWSTKVNVDLSYNNFSLSQVSQICQNDKVNLFSTSWARNDIGTTSCLSFECPKPSNSLYINCGGNQAKVNRTTYDGDSDSSGPARFHASPTGKWASSTTGAFIDSDQLGATYYSTKYTSTLTMVDAELYMTARVSPISLTYYGFCLENGSYTVNLHFAEIMIRDDQTYGSLGRRVFDIYLQGKAVQKDFNIAEEAGGVGKKIVKQFNVVVTSNTLEIRLYWAGKGTQFLPNRSVYGPLISAISVETDSPHGSISAGAVVGIVVAATVIIILVFGTLWWKGCFGKKNSLAKELESLDLHTGLFTLRQIKAATNNFDLSNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIRLDWSTRKKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLDPKISDFGLARLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIISGKNNTLYRSKEEAFYLLDWAHLLKERGDLMELVDRRLGADFNKKEAMVVINVALLCTNVTSNLRPSMSSVVSYLEGRTMVPEFVSDSSEVMDEKKMEVMRKYYYQMEENTSQSQRILNDGSWTATSSSAVDLYPVHLDSSYWEERN 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi255g00022 1005 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 202 - -
Vivi255g00022 1005 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 971 - -
Vivi255g00022 1005 Gene3D Ribonuclease Inhibitor 273 388 IPR032675 -
Vivi255g00022 1005 FunFam Putative LRR receptor-like serine/threonine-protein kinase 738 945 - -
Vivi255g00022 1005 Pfam Leucine rich repeat 284 343 IPR001611 GO:0005515
Vivi255g00022 1005 Pfam Malectin domain 406 590 IPR021720 -
Vivi255g00022 1005 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 403 595 - -
Vivi255g00022 1005 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 203 269 - -
Vivi255g00022 1005 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 631 737 - -
Vivi255g00022 1005 Gene3D Transferase(Phosphotransferase) domain 1 738 954 - -
Vivi255g00022 1005 CDD STKc_IRAK 668 935 - -
Vivi255g00022 1005 Gene3D Phosphorylase Kinase; domain 1 630 737 - -
Vivi255g00022 1005 Pfam Protein kinase domain 664 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00022 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Vivi255g00022 1005 SMART serkin_6 662 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00022 1005 Gene3D - 404 595 - -
Vivi255g00022 1005 SUPERFAMILY Protein kinase-like (PK-like) 645 947 IPR011009 -
Vivi255g00022 1005 SUPERFAMILY L domain-like 69 368 - -
Vivi255g00022 1005 Gene3D Ribonuclease Inhibitor 207 272 IPR032675 -
Vivi255g00022 1005 Gene3D Ribonuclease Inhibitor 31 206 IPR032675 -
Vivi255g00022 1005 ProSiteProfiles Protein kinase domain profile. 662 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi255g00022 25 976 Receptor kinase-like Gene Family AT1G53420 53.583 0.0 992
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi255g00022 Pkinase 5.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi255g00022 - - gmx:732563 1294.64