Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi255g00020 ATGAACACTACCTTTCAATTTTTCTCCCTTTTCGTCATTGCCATTTGGTTCATATCTCTTACAGCTTTTGGAGCTGCTACTATTCACCCCGACGAAAAGAAAGCTCTTGAAGATATAGCTAAATCACTTGGTAAGAAGGATTGGAACTTCAACATAGATCCATGCAGCAACAAACCTAACTGGACTATGGGTGAGCCTCCCAATCGCAGATTGGATATCGTACAGAGCAATGTTTACTGTAACTGCTCTATTGCCGGTGACAATTTCTGCCATGTTATTTCAATTGACCTCTCTCGCAATTATTTGCATGGTACAATTCCAAAACAATGGGGCTCCATGATGAATATTAGTAAAATTGCTCTTCCAGTAAACCGATTAACGGGTTCAATACCAGCTGAGATTGCAAACATATCTACTCTCCAAAATTTGGAGTTATGGAACAATCAGTTGTCAGGAAATCTTCCTCCTGAACTTGGGTATCTAACCCAAATTCAAACACTGCGAGTTTCCTCTAACAATTTTACTGGAGAACTACCTGTGACATTGGCCAAGCTCATTACATTGCTGGATTTCCGAATTGAGGACAATCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGAAAAGTATACAAAAACTAATGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCACTCTTGACAAACTTAACTAACTTGAGAATTAGTGATTTGAATGGATCTGACTATGCACCTTTGCCACAACTTAATAATCTGACGTCATTAGAAAAACTGATTCTAAGGAATTGCAACATTAACGGGACGCTACCTAATTATCTTAGGAATATGACAACATTAAAGCATTTAGACCTCAGCTTTAACAACTTAAGTGGAATAATTCCTTCGACCTATGCTTACCTAAACAACTTGACATACATAATTTTAACTGGAAACCTTCTCACTGGATCAATGCCTCCTTGGTCAACAAAAGTCAACGTAGACCTTTCATACAATAACTTCAGCTTAAGCCAAGTGAGTCAGATATGTCAAAATGATAAAGTGAACTTGTTTTCTACCTCATGGGCACGCAATGACATAGGAACAACTTCGTGTTTGAGCTTTGAATGTCCCAAACCCTCAAACTCCCTTTATATAAATTGTGGTGGAAATCAAGCAAAAGTCAACAGAACAACCTATGATGGTGATTCAGATTCATCTGGACCAGCTAGATTCCATGCCAGTCCAACAGGAAAATGGGCATCTAGCACCACTGGTGCATTCATTGATAGTGATCAACTTGGAGCAACTTATTATTCCACAAAATATACCTCTACACTTACTATGGTGGATGCTGAATTGTACATGACTGCGCGCGTTTCTCCTATTTCTTTGACTTATTATGGATTTTGCCTGGAAAATGGAAGCTACACAGTAAATCTACATTTTGCTGAAATAATGATCAGAGATGATCAAACCTATGGTAGTCTTGGAAGGCGTGTATTTGATATCTACCTTCAGGGAAAGGCAGTGCAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGTAAGAAAATTGTAAAACAGTTCAATGTTGTTGTTACTAGTAATACCTTGGAGATCCGATTGTATTGGGCTGGAAAAGGGACACAGTTTCTCCCTAATAGATCAGTATACGGTCCTCTTATATCAGCTATATCAGTTGAAACTGCAGACTCTCCACATGGAAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGTTGCAGCAACAGTTATTATCATTCTAGTATTTGGTACACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAATTCATTAGCAAAAGAGCTGGAGAGTTTAGACCTACACACGGGTTTATTTACCTTAAGACAAATCAAAGCAGCCACAAATAACTTTGATCTTTCCAATAAGATTGGAGAAGGAGGGTTTGGTCCCGTGTACAAGGGATGTTTACCCAATGGGACATTAATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAGCATCCTTATCTTGTTAAACTCTATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTTTAGCTCGTGCTTTATTTGGTCCAGAAGAACATCAAATAAGATTAGATTGGTCAACTAGGAAGAAGATCTGTGTTGGTATTGCTAGAGGATTGGCATACCTTCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAAGCAACTAATGTGTTGCTTGATAAAGATCTTGACCCAAAGATATCTGATTTTGGTTTGGCCAGACTTGATGAGGAGGAGAACACTCACATTAGCACTAGAATTGCTGGGACCTACGGATATATGGCTCCTGAGTACGCAATGCATGGTTATTTGACGGACAAAGCAGACGTTTATAGTTTTGGAATTGTTGTCTTGGAAATCATTAGTGGAAAGAACAACACCCTCTATCGGTCAAAGGAGGAGGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAGGAGAGGGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGAGCAGATTTCAACAAAAAGGAAGCTATGGTGGTAATAAATGTGGCTCTCCTATGCACGAATGTAACTTCAAACCTTAGGCCCTCCATGTCGTCGGTGGTAAGTTACCTTGAAGGAAGGACTATGGTTCCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGATGGAAGTAATGAGGAAGTATTACTATCAGATGGAAGAAAATACCTCACAAAGTCAGCGTATATTAAATGACGGGTCATGGACTGCTACATCTTCATCAGCTGTAGACCTTTATCCTGTTCACCTTGATTCTTCCTATTGGGAGGAAAGAAATTAA 2949 0.3903 MNTTFQFFSLFVIAIWFISLTAFGAATIHPDEKKALEDIAKSLGKKDWNFNIDPCSNKPNWTMGEPPNRRLDIVQSNVYCNCSIAGDNFCHVISIDLSRNYLHGTIPKQWGSMMNISKIALPVNRLTGSIPAEIANISTLQNLELWNNQLSGNLPPELGYLTQIQTLRVSSNNFTGELPVTLAKLITLLDFRIEDNQFSGKIPDYIQNWKSIQKLMIQGSGLSGPIPSGISLLTNLTNLRISDLNGSDYAPLPQLNNLTSLEKLILRNCNINGTLPNYLRNMTTLKHLDLSFNNLSGIIPSTYAYLNNLTYIILTGNLLTGSMPPWSTKVNVDLSYNNFSLSQVSQICQNDKVNLFSTSWARNDIGTTSCLSFECPKPSNSLYINCGGNQAKVNRTTYDGDSDSSGPARFHASPTGKWASSTTGAFIDSDQLGATYYSTKYTSTLTMVDAELYMTARVSPISLTYYGFCLENGSYTVNLHFAEIMIRDDQTYGSLGRRVFDIYLQGKAVQKDFNIAEEAGGVGKKIVKQFNVVVTSNTLEIRLYWAGKGTQFLPNRSVYGPLISAISVETADSPHGSISAGAVVGIVVAATVIIILVFGTLWWKGCFGKKNSLAKELESLDLHTGLFTLRQIKAATNNFDLSNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIRLDWSTRKKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLDPKISDFGLARLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIISGKNNTLYRSKEEAFYLLDWAHLLKERGDLMELVDRRLGADFNKKEAMVVINVALLCTNVTSNLRPSMSSVVSYLEGRTMVPEFVSDSSEVMDEKKMEVMRKYYYQMEENTSQSQRILNDGSWTATSSSAVDLYPVHLDSSYWEERN 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi255g00020 982 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 181 245 - -
Vivi255g00020 982 Gene3D Phosphorylase Kinase; domain 1 607 714 - -
Vivi255g00020 982 SMART serkin_6 639 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00020 982 Pfam Leucine rich repeat 260 319 IPR001611 GO:0005515
Vivi255g00020 982 Gene3D Ribonuclease Inhibitor 31 154 IPR032675 -
Vivi255g00020 982 Gene3D - 380 572 - -
Vivi255g00020 982 Gene3D Ribonuclease Inhibitor 248 355 IPR032675 -
Vivi255g00020 982 Gene3D Ribonuclease Inhibitor 155 247 IPR032675 -
Vivi255g00020 982 ProSiteProfiles Protein kinase domain profile. 639 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00020 982 SUPERFAMILY Protein kinase-like (PK-like) 622 924 IPR011009 -
Vivi255g00020 982 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 948 - -
Vivi255g00020 982 Pfam Protein kinase domain 641 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00020 982 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 379 571 - -
Vivi255g00020 982 Pfam Malectin domain 382 566 IPR021720 -
Vivi255g00020 982 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 608 714 - -
Vivi255g00020 982 CDD STKc_IRAK 645 912 - -
Vivi255g00020 982 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 86 180 - -
Vivi255g00020 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 761 773 IPR008271 GO:0004672|GO:0006468
Vivi255g00020 982 Gene3D Transferase(Phosphotransferase) domain 1 715 931 - -
Vivi255g00020 982 FunFam Putative LRR receptor-like serine/threonine-protein kinase 715 922 - -
Vivi255g00020 982 SUPERFAMILY L domain-like 71 340 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi255g00020 25 953 Receptor kinase-like Gene Family AT1G53420 53.674 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi255g00020 Pkinase 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi255g00020 - - gmx:732563 1268.83