Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi255g00016 ATGAACACTACTTCTCAGTTTCTCTTCCTTTCACTCATTGCCATATGGTTCATATCTCTAACAGCTTTTGGAGCTGATACTATTCACCCCGACGAAAAGAAAGCTCTTGAAGATATAGGTAAATCACTTGGTAAGAAGGATTGGAACTTCGACATAGATCCATGCAGCAACAAACCTAACTGGGCCACACCTCCCATATCCAAAGTCGTAGAAAATAATGTCACCTGTGACTGCTCTGTTGCTGGTGACGACTTCTGCCATGTTGTTTCAATAACTTTGAAAGGGCAAAATCTGCTTGGCACTCTCCCACCAGAACTGACCGGGTTGCATTACCTTCAAACTATTGACCTCTCTCGCAATTACTTGAATGGCACAATTCCAAAGGAATGGGGCTCCATGATGAATATTAGAAAAATTGCTCTCCCCGAAAATCGTCTATCGGGTTCAATACCAGCTGAGATTGCAAACATATCTACTCTCCAAATTTTGGAGTTATGGAATAATCAGTTGTCTGGAAATCTTCCTCCTGAGCTTGGGAGTCTAACCCAAATTCTAACACTGCGAATTTCCTCTAACAATTTTATTGGAGAACTACCTGGGACATTGACCAAGCTCACTACATTGCGAGATTTCCGAATTGAGGACAACCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGATAAATATCAATACACTAGTGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCTCTTTTAAGAAACTTAACTGACTTGAGAATTAGTGATTTGAATGGATTTGAGTATGCACCTTTGCCAGAACTTAATAAAATGACTTCGTTAAAAACTTTGATTCTGAGGAACTGCAACATCAATGGAAAATTATATGATTATCTTGGGACTATTGCATCATTAAAAATATTGGACCTCAGTTTTAACAAATTAAGTGGAACAATTCCGAGATCCTATGCTGCCATGAACAGTTCGAATTACATATTTCTTACTGGAAACCTTCTCACTGGACCAGTACCTCCTACTTGGAGAAAGAATACCTACGTAGATCTTTCATACAATAACTTCAGCATCAGCCAGGAGAGTCAGATATGTCGAGATGACAATGTGAACTTGTTTTCTACCTCAAGGGCACATAATGATATGGGAACAGTTTCGTGTTTGAGCCTTAAATGTCCTAAACCCTCATACTCCCTTTATATAAATTGTGGTGGATATCAAGCAATAGTCAACCGAACAACTTATGATGGTGATTCAGACTCATCTGGACCAGCTAGATCCCATGCCACAGAAAATTGGGCATTTAGCAGCACTGGTCTATTCATTGAACATGATATACTTGGAAGAACTTTTACCCCACAAAATATCTCTAAACTTACTATGGAAGATGCTGAGTTGTACATGAATGCGCGTATTTCACCTATTTCTTTAACTTATTATGGGTTTTGCCTGGCAAGTGGAAGCTACACAGTAAATCTGCATTTTGCTGAAATAATGTTCACAGATGATCAAACTTATGGTAGTCTTGGAAGGCGTGTATTTGATATCTATCTTCAGGGAAAGCAGGTGCAAAAGGACTTCAATATTGCACAAGAAGCAGGAGGAGTTGGTAAGAAAATCATAAAACAGTTCAAAGATGTTGTTGTTTCTAGTAATACTTTGGAGATCCGTTTATATTGGGCTGGAAAAGGGACACAGGCTGTCCCAAATAAATCAGTATATGGTCCTCTTATATCAGCTATCTCAGTGGAATCTGACTCTCCACCTGGAACTGGAAGCATATCTGCAGGAGCTGTGGCTGGAATTGTGATTGCTGCAACAATTATTATCATTCTAGTATTCGGTATACTTTGGTGGAAAGGATGTTTTGAAAAGAAAAACTCATTAGCGAGAGAGCTGGAGAGTTTAGACATTCAAACAGGTTTATTTACCTTAAAACAAATCAATGCAGCTACGAATCACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCCGTGTACAAGGGATGCTTACCCAATGGGACATTGATAGCAGTAAAGCAACTTTCTTCTAAATCAAGGCAAGGGAATCGTGAGTTTTTAAATGAGATTGGCATGATTTCTGCTTTGCAACACCCTAATCTTGTTAAACTCTGCGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTTTAGCACGTGCTTTATTTGGTCCAGAAGAACTCCAAATAAAATTGGATTGGTCAACAAGGAGGAAGATCTATGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGATTGAAGGTTGTTCACAGGGACATCAAAGCATCTAATGTGTTGCTCGATAAAGATCTTAACCCAAAGATATCTGATTTTGGTTTAGCCAGACTTGATGAGGAGGACAATACTCACATTAGTACTAGAATTGCTGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACAGACAAGGCAGACGTTTATAGTTTTGGAATTGTTGCCATGGAAATCGTTAGTGGAAGGAGCAACACCCTTTATCGGTCCAAGGAGGAACCATTCTATCTTCTTAATTGGGCACATTTGTTGAAAGAGAGGGGTGACCTAATAGAACTAGTTGATAGAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATGGTGGTAATCAATGTGGCTCTCCTATGCACGAATGTAACTTCAAACCTTAGGCCCTCCATGTCGTCGGTGGTAAGTTTCCTTGAAGGAAGGAGTATGGTTCCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGATGGAAGTAATGAGGAAGTATTACTATCAGATGGAAGAAAATGAGAAAAGTAAGTCACAAACACAAAGTCAGAGTTTATCAATTGATGGGCCATGGACAGCTTCATCTTCGTCAGCTGTTGATCTTTATCCAGTTCACCTTGATTCTTCCTATTGGGAGAAAAGAAATTAA 3024 0.3905 MNTTSQFLFLSLIAIWFISLTAFGADTIHPDEKKALEDIGKSLGKKDWNFDIDPCSNKPNWATPPISKVVENNVTCDCSVAGDDFCHVVSITLKGQNLLGTLPPELTGLHYLQTIDLSRNYLNGTIPKEWGSMMNIRKIALPENRLSGSIPAEIANISTLQILELWNNQLSGNLPPELGSLTQILTLRISSNNFIGELPGTLTKLTTLRDFRIEDNQFSGKIPDYIQNWININTLVIQGSGLSGPIPSGISLLRNLTDLRISDLNGFEYAPLPELNKMTSLKTLILRNCNINGKLYDYLGTIASLKILDLSFNKLSGTIPRSYAAMNSSNYIFLTGNLLTGPVPPTWRKNTYVDLSYNNFSISQESQICRDDNVNLFSTSRAHNDMGTVSCLSLKCPKPSYSLYINCGGYQAIVNRTTYDGDSDSSGPARSHATENWAFSSTGLFIEHDILGRTFTPQNISKLTMEDAELYMNARISPISLTYYGFCLASGSYTVNLHFAEIMFTDDQTYGSLGRRVFDIYLQGKQVQKDFNIAQEAGGVGKKIIKQFKDVVVSSNTLEIRLYWAGKGTQAVPNKSVYGPLISAISVESDSPPGTGSISAGAVAGIVIAATIIIILVFGILWWKGCFEKKNSLARELESLDIQTGLFTLKQINAATNHFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSRQGNREFLNEIGMISALQHPNLVKLCGCCVEGDQLLLIYEYLENNSLARALFGPEELQIKLDWSTRRKIYVGIARGLAYLHEESRLKVVHRDIKASNVLLDKDLNPKISDFGLARLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVAMEIVSGRSNTLYRSKEEPFYLLNWAHLLKERGDLIELVDRRLGSDFNKKEAMVVINVALLCTNVTSNLRPSMSSVVSFLEGRSMVPEFVSDSSEVMDEKKMEVMRKYYYQMEENEKSKSQTQSQSLSIDGPWTASSSSAVDLYPVHLDSSYWEKRN 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi255g00016 1007 MobiDBLite consensus disorder prediction 966 987 - -
Vivi255g00016 1007 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 199 265 - -
Vivi255g00016 1007 Pfam Malectin domain 402 585 IPR021720 -
Vivi255g00016 1007 Gene3D Ribonuclease Inhibitor 28 266 IPR032675 -
Vivi255g00016 1007 ProSiteProfiles Protein kinase domain profile. 659 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00016 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Vivi255g00016 1007 SUPERFAMILY Protein kinase-like (PK-like) 642 943 IPR011009 -
Vivi255g00016 1007 Gene3D - 398 590 - -
Vivi255g00016 1007 Pfam Protein tyrosine and serine/threonine kinase 661 930 IPR001245 GO:0004672|GO:0006468
Vivi255g00016 1007 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 969 - -
Vivi255g00016 1007 SMART serkin_6 659 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00016 1007 CDD STKc_IRAK 665 932 - -
Vivi255g00016 1007 Gene3D Phosphorylase Kinase; domain 1 625 734 - -
Vivi255g00016 1007 SUPERFAMILY L domain-like 83 360 - -
Vivi255g00016 1007 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 628 734 - -
Vivi255g00016 1007 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 198 - -
Vivi255g00016 1007 FunFam Putative LRR receptor-like serine/threonine-protein kinase 735 942 - -
Vivi255g00016 1007 Gene3D Ribonuclease Inhibitor 267 391 IPR032675 -
Vivi255g00016 1007 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 400 590 - -
Vivi255g00016 1007 Gene3D Transferase(Phosphotransferase) domain 1 735 945 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi255g00016 27 976 Receptor kinase-like Gene Family AT1G53420 53.702 0.0 973
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi255g00016 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi255g00016 - - gmx:732563 1290.79