Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi255g00013 ATGAACACTTCCTCTCAATTTTTCTTCCTTTCACTCATTGCCATATGGCTCATATCTCTAACAGCTTTTGGAGCTACTACTATTCACCCGGACGAAAAGAAAGCTCTTGAAGATATAGCTACATCACTTGGTAAGAAGGATTGGAACTTCGGCATAGATCCATGCAGCAACAAACCTAACTGGTTTACGCCTCCCATACCCAAAATCTTAGAAAACAATGTAACCTGTAACTGCTCTGTTCCTAGTGACAACTTCTGTCATGTTACTATAATAAGTTTGAAAGGGCAAAATCTTCAAGGCACTCTCCCACGGGAACTGAACAGGTTGCAATACCTTCAAACTATTGACCTCTCTCGCAATTACTTGAACGGTACAATTCCTAAAGAATGGGGCTCCATGACGAATCTTCTTAACATTAATCTCCTTGGAAATCGATTAACGGGTTCAATACCAAAGGAGATTGCAAATATATCAACCCTGATTCAGTTGGAGTTAACGGCCAATCAAATGTCTGGAAATATTACTTCTGAGCTTGGGAATCTCCCCCAGATTCGAACACTGCGATTTTCTTCTAACAATTTTTCTGGAGAGCTACCTGTGACATTAGCCAAGCTCGCTACATTGCAAGAGTTCCAAATTTCGGACAACCAATTCTCAGGAAAGATACCCGATTTTATTCAGAACTGGACTAATATCAATACGCTGAGAATTAGTGATTTAAATGGATCTGAATATGCACCTTTGCCGCAACTTAAAAATCTGACATCGTTAAGCAAACTGCTTCTAAGGAATTGCAACATCAATGGAACACTACCTGATCTCGGGACTAAGACATCGTTAAAATACTTAGACTTCAGCTTTAACAAATTAAGTGGAACAATTCCAAGTACCTATGCTGACATAAACGATATTATGAACTTCATATTTTTAACTGGAAACCTTCTCACAGGACCAATACCTTCTTGGAAAACGAACGTCTACGTAGATCTTTCGTACAATAACTTCAGCGTCAGCCAAGGGAATCGGATATGTCAAAATGATAAAGTAAACTTGTTTTCTACCTCATGGGCAAATAATAACATAGGAACAGTTTCGTGTTTGAGCGGATGCACCAATCCCTCCTACTCCCTTTATATAAATTGTGGTGGACAGCAAGAAACAGTTAGCAGAACAAGTTATAATGGCGATTCAGATTCACCTGGAGCAGCTAAATTCCATGTCAGTCCAACAGGAAATTGGGCATTTAGCACCACTGGTATATTCATTGATAGTGACCAACTCGGAGAAACTTATTCCCCGCAAAATGTCACCACACTTACTATGGAAGATGCTGATTTGTACATGAATGCACGTGGTTCTGCTATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAATGGAAGCTACACAGTAAATCTACATTTTGCTGAAATAATGTTCAGAGACGACCAAACTTATGGAAGTCTTGGAAGACGTGTATTTGATATCTACCTTCAGGGAAAGCCAGTGCAAAAGGACTTCAATATTGCCAAAGAAGCAGGAGGAGTTGGTAAGAAAGTTATAAAACAGTTCAAAGATGTTGTTGTCACTAGTAATACCTTGGAGATCCGTTTGTATTGGGCTGGAAAAGGGACACAGGCTCTCCCAAATAGATCAATATTTGGTCCTCTTATATCTGCCATATCAGTGGAATCTGACTCTCCACCTGGAACTGGAAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGTTGCAGCAACAGTTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAAAAAAACTCATTAGCAAAAGACTTGAAGAGTTTAGACGTTCAAACGGGTATATTTACCTTACGACAAATCAAAGCAGCTACAAATAACTTCGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCTGTTTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTAAAGCAACTTTCTTCTAAGTCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAACATCCTTATCTCGTTAAACTCCATGGCTGCTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACCTGGAAAACAATAGTCTAGCTCGTGCCTTATTTGGTTCAGAGGAACACCAAATAAAATTACATTGGTCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTATTGCTTGATACGAATCTTGACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGACGAGGAGGACAATACTCACATTAGTACTAGAATTGCCGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTAACAGACAAAGCAGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAGTCGTTAGTGGAAGAAACAACACCCTTCATCGGGCAAAGGAGGAAGCAGTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAAAGGGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATGGTGATGATCAATGTGGCTCTTCTATGCACCAATGTCACTTCAAATCTTAGGCCTGCCATGTCATCAGTTGTAAGTTACCTTGAAGGAAGGACTATGGTTCCAGAGTTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTACCAGAAGGAAGAAAATAATACAAGTAGTACGTCACATACACAAAGTCAGAGTTTAATAAGTGATGGGCCATGGACTGCTTCATCTTCATCAGCTGTAGACCTTGATTCTTCCTATTTGGATGGAAGAAATTAA 2940 0.3952 MNTSSQFFFLSLIAIWLISLTAFGATTIHPDEKKALEDIATSLGKKDWNFGIDPCSNKPNWFTPPIPKILENNVTCNCSVPSDNFCHVTIISLKGQNLQGTLPRELNRLQYLQTIDLSRNYLNGTIPKEWGSMTNLLNINLLGNRLTGSIPKEIANISTLIQLELTANQMSGNITSELGNLPQIRTLRFSSNNFSGELPVTLAKLATLQEFQISDNQFSGKIPDFIQNWTNINTLRISDLNGSEYAPLPQLKNLTSLSKLLLRNCNINGTLPDLGTKTSLKYLDFSFNKLSGTIPSTYADINDIMNFIFLTGNLLTGPIPSWKTNVYVDLSYNNFSVSQGNRICQNDKVNLFSTSWANNNIGTVSCLSGCTNPSYSLYINCGGQQETVSRTSYNGDSDSPGAAKFHVSPTGNWAFSTTGIFIDSDQLGETYSPQNVTTLTMEDADLYMNARGSAISLTYYGFCLANGSYTVNLHFAEIMFRDDQTYGSLGRRVFDIYLQGKPVQKDFNIAKEAGGVGKKVIKQFKDVVVTSNTLEIRLYWAGKGTQALPNRSIFGPLISAISVESDSPPGTGSISAGAVVGIVVAATVIIILVFGILWWKGCFGKKNSLAKDLKSLDVQTGIFTLRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLHGCCVEGDQLLLIYEYLENNSLARALFGSEEHQIKLHWSTRQKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDTNLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEVVSGRNNTLHRAKEEAVYLLDWAHLLKERGDLMELVDRRLGSDFNKKEAMVMINVALLCTNVTSNLRPAMSSVVSYLEGRTMVPEFVSDSSEVMDEKKLEVMRQYYYQKEENNTSSTSHTQSQSLISDGPWTASSSSAVDLDSSYLDGRN 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi255g00013 979 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 604 710 - -
Vivi255g00013 979 Gene3D - 374 566 - -
Vivi255g00013 979 CDD STKc_IRAK 641 908 - -
Vivi255g00013 979 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 198 - -
Vivi255g00013 979 SUPERFAMILY L domain-like 72 335 - -
Vivi255g00013 979 MobiDBLite consensus disorder prediction 939 979 - -
Vivi255g00013 979 SUPERFAMILY Protein kinase-like (PK-like) 618 921 IPR011009 -
Vivi255g00013 979 Pfam Malectin domain 376 561 IPR021720 -
Vivi255g00013 979 Gene3D Phosphorylase Kinase; domain 1 603 710 - -
Vivi255g00013 979 ProSiteProfiles Protein kinase domain profile. 635 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00013 979 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 374 566 - -
Vivi255g00013 979 Gene3D Ribonuclease Inhibitor 31 156 IPR032675 -
Vivi255g00013 979 Pfam Protein tyrosine and serine/threonine kinase 637 904 IPR001245 GO:0004672|GO:0006468
Vivi255g00013 979 SMART serkin_6 635 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00013 979 FunFam Putative LRR receptor-like serine/threonine-protein kinase 711 918 - -
Vivi255g00013 979 Gene3D Ribonuclease Inhibitor 157 243 IPR032675 -
Vivi255g00013 979 Gene3D Ribonuclease Inhibitor 244 350 IPR032675 -
Vivi255g00013 979 Gene3D Transferase(Phosphotransferase) domain 1 711 921 - -
Vivi255g00013 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 757 769 IPR008271 GO:0004672|GO:0006468
Vivi255g00013 979 MobiDBLite consensus disorder prediction 939 972 - -
Vivi255g00013 979 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 944 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi255g00013 25 951 Receptor kinase-like Gene Family AT1G53420 52.801 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi255g00013 PK_Tyr_Ser-Thr 8.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi255g00013 - - gmx:732563 1229.16