Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi255g00011 ATGGGCACTTCCTCTCAGTTTCTCTTCCTTTTACTCATTGCCATATGGTTCATATCTTTAACAGCTTTTGGAGCGGATACTATTCACCCTGACGAAAAGAAAGCTCTTGAAGATATAGCTAAATCACTTGGTAAGAAGGATTGGAACTTTGATGTTGATCCCTGCAGCAACAAACCTAATTGGGCTACACCAAAGCCTACCACTCACAGAGTGAGTCTTGTAGAGAATAATGTCACCTGCAACTGCAGTGTTGCTGGTGACAACTTCTGCCATGTTGTTTCAATAACTTTGAAGGGGCAAAATCTCCCCGGCACTCTCCCACCAGAACTGACCAGGTTGCATTACCTTCAAATCATTGACCTCTCTCGCAATTACTTGAACGGTACAATTCCTAAAGAATGGGGCTCCATGGTGAATCTTCTTAACATTACTCTCCCTGGAAATCGATTAACGGGGTCAATACCAAAGGAGATTGCAAATATATCTACCCTGCTTCACTTGGAGTTAACGGCCAATCAAATGTCTGGGAATATTACTTCTGAGCTTGGGAATCTAACCCAGATTCAAACACTGCGAATTTCCTCTAACAATTTTTCGGGAGAACTACCTGCAACATTGGCCAAGCTTACTACATTGCAAAATTTCCATATTTCAGACAACCAATTCACAGGAAAGATACCCGATTTTATTCAGAACTGGACTAATATCACTACGCTAATCATTCAAGGGAGTGGATTAAGTGGGCCTATTCCTTCCAAAATTTCAATTTTGAGAAACTTAACTGACTTGAGAATTAGTGATTTGAATGAATCTGAATATGCACCTTTGCCCCAACTAAATAATCTGACATTGTTACAAAAACTGATTCTGAGGAATTGCAACATCAATGGAACTCTACCTGAATATCTTAATGCTATCACATCATTAAAATACTTAGACTTCAGCTTTAACAAATTCAGTGGAACAATTCCGAGTACCTATGCTGACATAAATGGCGTGAAATTCATATTTTTAACTGGAAACCTTCTCACAGGACCGGTGCCTTCTTGGAAAAAGAACATCGACGTAGATCTTTCATACAATAACTTCAGCATCACCCAAGAAAGTCAGATATGTCAAAGTGATAAACTAAACTTGTTTTCTACCTCATGGGCAAACAATGACATAGGAACAGTTTCGTGTTTGAGCGAATGTCGCAAACCCTCATACTCCCTTTATATAAATTGTGGTGGAAAGCAAGAAAAAGTCAATGGAGCAAGTTATGATGACGATTCAGATTCACCTGGACCAGCTAAACTCCATGTCAGTCCAACAGGAAAATGGGCATTTAGCACCACTGGTTTGTTCATTGATGGTGATCAACTTGGAGAAACTTATTCCCCACCAGATTTTACTCCACTTACTATGGAAGATGCTAAGTTGTACATGAATGCACGCGGTTCTCCCATTTCTTTGACTTATTATGGGTTTTGTCTGAAAAATGGAAGCTACACGGTAAATCTTCATTTTGCTGAAATAATGTTCACAGACGATCAAACTTATGGTAGTCTTGGAAGACGTGTATTTGATATCTACCTTCAGGGAAATCCAGTGCAAAAGGACTTCAATATTGCAAAAGAAGCGGGAGGAGTTGGTAAGAAAGTCATAAAACAGTACAAAAATGTTTCTGTTACTAGTAGTACCTTGGAGATCCGTTTGTATTGGGCTGGAAAAGGGACACAATCTCTTCCAAATAGATCAGTATTTGGTCCTCTTATATCGGCCATATCAATGGAATCTGACTCTCCACCTGGAGGCATATCTGCAGGAGTTGTGGTTGGAATTGTGGTTGCAGCAACAGTTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTAAGAAGAAAGAATCATTAGCAAGAGAGCTGAAGAGTTTGGACGTTCAAACTGGTTTATTTGCCTTAAGACAAATCAAAGCAGCTACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCCGTGTATAAGGGATGTTTACCCAATGGGACATTGATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCTTATCTTGTTAAACTCCATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGGTATATGAATACCTGGAAAACAATAGTCTAGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATTAAATTAGATTGGCCAACAAGGCATAAGATTTGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGATTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTATTGCTTGATACGAATCTTGACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGTACTAGAATTGCTGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTTAGTGGAAAGAGCAACACCATGTATCGATCAAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAGGGGTGACCTGACGGAGCTAGTTGATAGAAGATTAGGTTTAGATTTCAACAAAAAGGAGGCTATGGTGGTAATCAATGTGGCTCTCCTATGCACCAATGTCACTTCAAATCTTAGGCCCGCGATGTCATCAGTTGTAAGTTTCCTTGAAGGAAGGAATGTGGTTCCAGAGTTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTACCAGAAGGAAGAAAATAATATAAGTACTACCTCACAAAGTCAGAGTATATTAAATGACGGGTCATGGACTGCTACATCTTCATCAGCTGTAGACCTTTATCCTGTCCACCTTGATTCTTCCTATTGGGAGGAAAGAAATTAA 3027 0.3938 MGTSSQFLFLLLIAIWFISLTAFGADTIHPDEKKALEDIAKSLGKKDWNFDVDPCSNKPNWATPKPTTHRVSLVENNVTCNCSVAGDNFCHVVSITLKGQNLPGTLPPELTRLHYLQIIDLSRNYLNGTIPKEWGSMVNLLNITLPGNRLTGSIPKEIANISTLLHLELTANQMSGNITSELGNLTQIQTLRISSNNFSGELPATLAKLTTLQNFHISDNQFTGKIPDFIQNWTNITTLIIQGSGLSGPIPSKISILRNLTDLRISDLNESEYAPLPQLNNLTLLQKLILRNCNINGTLPEYLNAITSLKYLDFSFNKFSGTIPSTYADINGVKFIFLTGNLLTGPVPSWKKNIDVDLSYNNFSITQESQICQSDKLNLFSTSWANNDIGTVSCLSECRKPSYSLYINCGGKQEKVNGASYDDDSDSPGPAKLHVSPTGKWAFSTTGLFIDGDQLGETYSPPDFTPLTMEDAKLYMNARGSPISLTYYGFCLKNGSYTVNLHFAEIMFTDDQTYGSLGRRVFDIYLQGNPVQKDFNIAKEAGGVGKKVIKQYKNVSVTSSTLEIRLYWAGKGTQSLPNRSVFGPLISAISMESDSPPGGISAGVVVGIVVAATVIIILVFGILWWKGCFKKKESLARELKSLDVQTGLFALRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLHGCCVEGDQLLLVYEYLENNSLARALFGPEEHQIKLDWPTRHKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDTNLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTMYRSKEEAFYLLDWAHLLKERGDLTELVDRRLGLDFNKKEAMVVINVALLCTNVTSNLRPAMSSVVSFLEGRNVVPEFVSDSSEVMDEKKLEVMRQYYYQKEENNISTTSQSQSILNDGSWTATSSSAVDLYPVHLDSSYWEERN 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi255g00011 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Vivi255g00011 1008 SMART serkin_6 661 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00011 1008 ProSiteProfiles Protein kinase domain profile. 661 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi255g00011 1008 SUPERFAMILY L domain-like 66 350 - -
Vivi255g00011 1008 Pfam Protein tyrosine and serine/threonine kinase 663 931 IPR001245 GO:0004672|GO:0006468
Vivi255g00011 1008 Gene3D - 402 594 - -
Vivi255g00011 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase 737 944 - -
Vivi255g00011 1008 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 29 269 - -
Vivi255g00011 1008 Gene3D Ribonuclease Inhibitor 273 394 IPR032675 -
Vivi255g00011 1008 Gene3D Ribonuclease Inhibitor 31 202 IPR032675 -
Vivi255g00011 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 972 - -
Vivi255g00011 1008 Gene3D Transferase(Phosphotransferase) domain 1 737 946 - -
Vivi255g00011 1008 Pfam Malectin domain 404 589 IPR021720 -
Vivi255g00011 1008 SUPERFAMILY Protein kinase-like (PK-like) 644 948 IPR011009 -
Vivi255g00011 1008 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 402 594 - -
Vivi255g00011 1008 Gene3D Phosphorylase Kinase; domain 1 626 736 - -
Vivi255g00011 1008 CDD STKc_IRAK 667 934 - -
Vivi255g00011 1008 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 630 736 - -
Vivi255g00011 1008 Gene3D Ribonuclease Inhibitor 203 272 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi255g00011 27 972 Receptor kinase-like Gene Family AT1G53420 53.902 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi255g00011 PK_Tyr_Ser-Thr 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi255g00011 - - gmx:732563 1291.95