Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi254g00055 ATGAACAAATATGAATCCAATAGAAGCATAAGTTTATTACTTGTTTATCTCATCACCCTCTTGCTTATTTCAAAACCAAAGGTTATACTTGCAAACATACTTCAAACATCAAACAACCACTATTATTCTACATGTCCTGTCACATATTCACCTTCAACTTCCACACCTGCACCACAGATAAAATACGATGTCTTTGTTAGCTTCAAAGGTAGCGATGTTCGCAAAAACTTCCTTAGTCATGTCCTCGAGGCTTTGTCGCGAAAGAAAATCGTTGTCTTTTCCGACAAGAAGCTCAAAACAGGAGATGAGTTATCAGCAATACAAAGAGCAATTGAAAACTCATTCATTTCATTGGTTATATTCTCCCAAAACTTTGCATCTTCATATTGGTGTTTGGAGGAAGTTCTGAAAATAGTTGAGTGTAGAGAAAAATATGGAAGGATTCTAATGCCGGTTTTCTACCAAGTTGAGCCTTCAGTTGTAAGGCATCAAAATGGGAGTTATAGAGATGCTTTTGCTCAACATGAAAAAAGGTATGATCCACACAAGGTGCTAAGTTGGAGATCTGCTTTGAAGCAATCTGCCAATATTTCTGGATTTGATTCATCATTTTTTTCGGATGATGCTAAGCTTGTTGAAGAAATACTTCAAAGTGTGTTGATGAAGTTAAACCAAGTGGACCAAGGTAAATCAAAAGGACTTGTAGGAATTGAAAAACAGATTTCACCTATAGAATCATTGTTACATTTAGAGTCGGAAGATGTTCGTGTTCTTGGAATTTGGGGTATGCCTGGTATTGGTAAAACAACTATTGCTGAAGAAGTATTTCGCAGGCTACGCTCCGAATACGAAAGTTTTTGTTTTATGGCTAATGTAAGAGAAGAATCGGAAAGATACGGTACAAACAGTTTGAGGTTAAGAAAGAAGCTTTTATCCACTTTACTAGAGGAAGAAGATTTGAAAGATGACATGATAAATGGATTACCTTCTTTAGTTAAGAAAAGGCTTGGCCGCATGAAGGTTCTTATTGTTCTTGACGATGTCAAAGATGCGGAGCAACTAGAAGTTTTGGTTGGAACAGCTGATTGGTTAGGTGCAGGGAGTAGAATCATCATAACTACTAGAGATAAGCAAGTACTTGCTGGAAAAGTTGATGATATATACGAGGTTGAGCCATTGGACTCTGCTGAATCTTTTCAGCTTTTCAATTTGCATGCCTTTAACAAACAAAAGCATCTTGAAATGGAGTACTATAAGCTATCAATGAAGATGGTAGATTATACCAAAGGTGTTCCATTAGTTCTTAAAGCTTTAGCTAACCTTCTTTGTGAGAAAGATAAAGCCATATGGGAAAGCCAAGCAAGGAATCTGAAAATAGAGCTGATTGAAAATGTCCATGATGTTTTTAGACTGATATACACTAATCTTGATTATTATGAAAAGATTATATTCCTGGATATTGCCTGCTTTTTTGACGGATTGAAGTTGAAACTTGACCTCATACAACTTCTATGGAAAGACCGTCGATATTCGGTGAGCACCAAACTAGACAGACTTAAAGATAAAGCTCTTGTAACAATTTCCCAACAAAATATTGTATCAATGCATGACATTATACAAGAAACAGCTTGGGAGATTGTTCGACAAGAATCTGTTGAAGAACCTGGAAGCCGAAGCCGACTATTGGATCCTGATGATATTTATCATGTATTGAAACGTGACAAGGGAAGTGAGGCCATCAGAAGTATGGCCATCAGATTATCTGAAATTAAGGAGCTGCAGTTAAGCCCTCGAGTATTTGCCAAGATGAGCAAATTGAAATTTTTGGATATTTACACTAATGGATCTCAAAATGAAGGGAGTTTGTCTCTTCCTAGAGGGCTTGAATTCTTGCCTAATGAACTGAGATATCTCCGTTGGGAGTATTACCCTTTGGAATCCTTGCCATCCAATTTTTCTGCGGAAAACCTTGTTACATTAAACTTGCCTTATAGCCAACTGAAGAAACTTTGGCATGGAGTGAAGGATCTTGGGAATTTGAATGTCCTTGTACTCCATTCATCCACACTCCTAACTGAGCTACCAGATTTTTCAAAGGCCACGAGTCTTGCGGTAGTGGATCTCCATTTCTGCATAGGGTTGACGAGTGTTCATCCATCTGTTTTCTCTCTAAAAAAGCTTAAGAAACTGGATATGAGCGGATGCATTTCCCTTACAAGTCTTCAAAGCAATAATACTCATTTAAGTTCACTTAGTTATCTCTCCCTCTACAACTGCACAGCGCTGAAGGAATTTTCAGTGACCTCAGAGAACATGAAAGAATTGAATTTAGAACTCACGGATATCAAGGAACTACCCTCGTCAATTGGACTTCAAACCAAACTCGAAAAGTTGCATCTTGGACATACTCATATTGAGACCTTGCCTAAAAGCATCAAGAATCTTACAAGACTGAGACATCTAGACTTGCATCAATGCAAGGAGCTTCAAACTCTACCAGAGCTTCCTCAATCGCTAGAAACACTAAATGCCGATGGGTGTGTATCACTAGAGAATGTAGTGTTCCACTCAACTGCTAGTGAACAACTTAAGGAAAAGAAGAAAAAGGTTACCTTCTGGAATTGCCTTAAATTAAACGAGCCTTCCCTCAAGGCTATTGAGTTGAATGCTCAAATTAACATGATGAACTTTTCACACCATTGTATATCCACACGTGATCTTGATCGTGATCACGACCACGATCGCAATCAAGGCATGTATGTTTATCCAGGTAGAGAAATTCCAGAGTGGTTGGAATATCGCACAAGTACAACTACACGTGATTACCTAACTATTGATCTTTCTTCTGCTCCTTATTTCTCTAACTTGGGCATCATTTTTGGATTCATCATTCCAACGACAACATCAGAGGGTTCAATTCTGAAATTCAAAATCAGCGATGGTGAAGATGAAGGTATCAAAGTGTACTTGAACAGACCACGTGATGGAATTGAATCGGATCATGTGTATCTAATGTATGACCCAAGATGTTCTCATTACCTAGCTAGCCGAGTGAATGATCAGTCGAAGATTAAAATCCAGGTTAGAGCGGCATCAAGAACACCGACAACACAGTACGTGCCAGTGCAGTTAAGAGGGTTTGGGGTTAGCCTAGTAACCCCTTCACAATATGACAAGTTTAAACAGCAATTGGAATTTGGTGATGGTACTCCAAATAACATGTGTTCGATGGAAGAGGAATCAAAGTTTCTTGGAATTGAAAATGCTAAACAGTTGAGTTATTTCAATTGCATGATTTAG 3300 0.3818 MNKYESNRSISLLLVYLITLLLISKPKVILANILQTSNNHYYSTCPVTYSPSTSTPAPQIKYDVFVSFKGSDVRKNFLSHVLEALSRKKIVVFSDKKLKTGDELSAIQRAIENSFISLVIFSQNFASSYWCLEEVLKIVECREKYGRILMPVFYQVEPSVVRHQNGSYRDAFAQHEKRYDPHKVLSWRSALKQSANISGFDSSFFSDDAKLVEEILQSVLMKLNQVDQGKSKGLVGIEKQISPIESLLHLESEDVRVLGIWGMPGIGKTTIAEEVFRRLRSEYESFCFMANVREESERYGTNSLRLRKKLLSTLLEEEDLKDDMINGLPSLVKKRLGRMKVLIVLDDVKDAEQLEVLVGTADWLGAGSRIIITTRDKQVLAGKVDDIYEVEPLDSAESFQLFNLHAFNKQKHLEMEYYKLSMKMVDYTKGVPLVLKALANLLCEKDKAIWESQARNLKIELIENVHDVFRLIYTNLDYYEKIIFLDIACFFDGLKLKLDLIQLLWKDRRYSVSTKLDRLKDKALVTISQQNIVSMHDIIQETAWEIVRQESVEEPGSRSRLLDPDDIYHVLKRDKGSEAIRSMAIRLSEIKELQLSPRVFAKMSKLKFLDIYTNGSQNEGSLSLPRGLEFLPNELRYLRWEYYPLESLPSNFSAENLVTLNLPYSQLKKLWHGVKDLGNLNVLVLHSSTLLTELPDFSKATSLAVVDLHFCIGLTSVHPSVFSLKKLKKLDMSGCISLTSLQSNNTHLSSLSYLSLYNCTALKEFSVTSENMKELNLELTDIKELPSSIGLQTKLEKLHLGHTHIETLPKSIKNLTRLRHLDLHQCKELQTLPELPQSLETLNADGCVSLENVVFHSTASEQLKEKKKKVTFWNCLKLNEPSLKAIELNAQINMMNFSHHCISTRDLDRDHDHDRNQGMYVYPGREIPEWLEYRTSTTTRDYLTIDLSSAPYFSNLGIIFGFIIPTTTSEGSILKFKISDGEDEGIKVYLNRPRDGIESDHVYLMYDPRCSHYLASRVNDQSKIKIQVRAASRTPTTQYVPVQLRGFGVSLVTPSQYDKFKQQLEFGDGTPNNMCSMEEESKFLGIENAKQLSYFNCMI 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi254g00055 1099 Gene3D - 222 386 IPR027417 -
Vivi254g00055 1099 Pfam Leucine Rich Repeat 656 675 IPR011713 -
Vivi254g00055 1099 FunFam Disease resistance protein (TIR-NBS-LRR class) 58 225 - -
Vivi254g00055 1099 ProSiteProfiles TIR domain profile. 60 223 IPR000157 GO:0007165
Vivi254g00055 1099 FunFam Disease resistance protein RPS4 577 770 - -
Vivi254g00055 1099 Gene3D Ribonuclease Inhibitor 770 896 IPR032675 -
Vivi254g00055 1099 Gene3D Ribonuclease Inhibitor 573 769 IPR032675 -
Vivi254g00055 1099 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 62 766 IPR044974 GO:0006952
Vivi254g00055 1099 Pfam TIR domain 61 234 IPR000157 GO:0007165
Vivi254g00055 1099 Pfam NB-ARC domain 251 463 IPR002182 GO:0043531
Vivi254g00055 1099 SUPERFAMILY Toll/Interleukin receptor TIR domain 53 200 IPR035897 -
Vivi254g00055 1099 Gene3D - 59 221 IPR035897 -
Vivi254g00055 1099 Gene3D - 393 477 IPR042197 -
Vivi254g00055 1099 SMART till_3 61 197 IPR000157 GO:0007165
Vivi254g00055 1099 PRINTS Disease resistance protein signature 428 442 - -
Vivi254g00055 1099 PRINTS Disease resistance protein signature 722 738 - -
Vivi254g00055 1099 PRINTS Disease resistance protein signature 257 272 - -
Vivi254g00055 1099 PRINTS Disease resistance protein signature 335 349 - -
Vivi254g00055 1099 SUPERFAMILY L domain-like 585 878 - -
Vivi254g00055 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 487 IPR027417 -
Vivi254g00055 1099 SUPERFAMILY "Winged helix" DNA-binding domain 465 572 IPR036390 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi254g00055 62 842 WRKY Transcription Factor Family AT4G12020 35.813 2.32e-124 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi254g00055 - - mtr:11419915 1758.81