Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi254g00048 ATGGGTAGAATTCATAAGGAGATCAATAAAGGTGCTTGGTCTCGCGAAGAAGATGATATTCTCTCTAAATATGTTGCCATTCATGGAGAAGGAAAATGGCAAAAGGTTGCCCAAAATGCAGGTTTAAAGCGATGTGGAAAAAGTTGTCGACAAAGATGGTTGAATTATCTAAAACCAGGTATAAAGAGAGGCGACATTTCTCCGGATGAAGAGGATATGATCATAAGACTTCATCGTCTTCTTGGTAACAGATGGTCTTTGATAGCTAAGAGATTACCCGGACGAACAGACAATGAAATCAAGAACTATTGGAATACGAATCTATCAAAGAAGCTACAAAAACGACATACATCATCATCATTTTCTGTCTCACTTCAAAACAAATATAGTCATGTTGCACCAGAAGCTCCAAGGCCAAGGAGATTGAAGATTGTTCATCAAAACAACAAAATTTCGGAGAATAACAATGTAAGCGAATGTGATCAAGGAAGTGATGAAACCTCAATCGCCGATTTCCTCATTGACAATGATCATCAAGACAATTTGTTGGTTGATGATGATGAGTCCAACACTACAAACTCAAAGATTCCACAAATGGAAGAAGATCACAAGAAGAGAAATTTGATCCTCTAG 633 0.376 MGRIHKEINKGAWSREEDDILSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISPDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKLQKRHTSSSFSVSLQNKYSHVAPEAPRPRRLKIVHQNNKISENNNVSECDQGSDETSIADFLIDNDHQDNLLVDDDESNTTNSKIPQMEEDHKKRNLIL 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi254g00048 210 FunFam Transcription factor TT2 66 135 - -
Vivi254g00048 210 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vivi254g00048 210 SMART sant 9 59 IPR001005 -
Vivi254g00048 210 SMART sant 62 110 IPR001005 -
Vivi254g00048 210 CDD SANT 12 57 IPR001005 -
Vivi254g00048 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Vivi254g00048 210 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 180 - -
Vivi254g00048 210 FunFam MYB-related transcription factor 9 62 - -
Vivi254g00048 210 MobiDBLite consensus disorder prediction 181 210 - -
Vivi254g00048 210 Gene3D - 3 63 - -
Vivi254g00048 210 CDD SANT 67 108 IPR001005 -
Vivi254g00048 210 Gene3D - 67 137 - -
Vivi254g00048 210 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Vivi254g00048 210 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Vivi254g00048 210 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Vivi254g00048 210 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vivi254g00048 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi254g00048 7 112 MYB Transcription Factor Family AT5G40330 66.981 1.35e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi254g00048 Myb_DNA-binding 5.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi254g00048 K09422 - gmx:547568 273.863