Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi254g00047 ATGGGTAGAATTCATAAGGAGATCAATAAAGGTGCTTGGTCTCGCGAAGAAGATGATATTCTCTCTAAATATGTTGCCATTCATGGAGAAGGAAAATGGCAAAAGGTTGCCCAAAATGCAGGTTTAAAGCGATGTGGAAAAAGTTGTCGACAAAGATGGTTGAATTATCTAAAACCAGGTATAAAGAGAGGCGACATTTCTCCGGATGAAGAGGATATGATCATAAGACTTCATCGTCTTCTTGGTAACAGATGGTCTTTGATAGCTAAGAGATTACCCGGACGAACAGACAATGAAATCAAGAACTATTGGAATACGAATCTATCAAAGAAGCTACAAAAACGACATACATCATCATCATTTTCTGTCTCACTTCAAAACAAATATAGTCATGTTGCACCAGAAGCTCCAAGGCCAAGGAGATTGAAGATTGTTCATCAAAACAACAAAATTTCGGAGAATAACAATGTAAGCGAATGTGATCAAGGAAGTGATGAAACCTCAATCGCCGATTTCCTCATTGACAATGATCATCAAGACAATTTGTTGGTTGATGATGATGAGTCCAACACTACAAACTCAAAGATTCCACAAATGGAAGAAGATCACAAGAAGGTAGTTTCAACCAATAGTACTCATAGCTCATCATCACCTTCTGATCATTTTCATCTTGTATCAGAGAAATTTGATCCTCTAGATAATCTTTTGGATGTGGAGCTCAAGAAGATGGCTTCTTTTCTTGGACTTGAAAATGATTGA 759 0.3729 MGRIHKEINKGAWSREEDDILSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISPDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKLQKRHTSSSFSVSLQNKYSHVAPEAPRPRRLKIVHQNNKISENNNVSECDQGSDETSIADFLIDNDHQDNLLVDDDESNTTNSKIPQMEEDHKKVVSTNSTHSSSSPSDHFHLVSEKFDPLDNLLDVELKKMASFLGLEND 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi254g00047 252 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vivi254g00047 252 SMART sant 9 59 IPR001005 -
Vivi254g00047 252 SMART sant 62 110 IPR001005 -
Vivi254g00047 252 CDD SANT 12 57 IPR001005 -
Vivi254g00047 252 MobiDBLite consensus disorder prediction 181 222 - -
Vivi254g00047 252 Gene3D - 3 63 - -
Vivi254g00047 252 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 203 - -
Vivi254g00047 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Vivi254g00047 252 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Vivi254g00047 252 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Vivi254g00047 252 FunFam MYB-related transcription factor 9 62 - -
Vivi254g00047 252 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Vivi254g00047 252 CDD SANT 67 108 IPR001005 -
Vivi254g00047 252 FunFam Transcription factor TT2 66 135 - -
Vivi254g00047 252 Gene3D - 67 136 - -
Vivi254g00047 252 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vivi254g00047 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi254g00047 7 112 MYB Transcription Factor Family AT5G40330 66.981 1.52e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi254g00047 Myb_DNA-binding 7.5e-16 CL0123