Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi254g00045 ATGAGTAACTGGTTAGGATTTTCTCTCACTCCACACTTTGGTGAAGAATTTCCTACAGAAAACCATAACCATAACCAGAATCAAAACCATGGTGAAGGTTCAGAAACTGGAAGAAACTATGTTCCTTCTTCTTCTTCTCATCATCATCAACATCATCAACACCTTTCTGTTATGCCTCTACGATCTGATGGTTCACTTTGTGTTTCTGATTCCTTTACACCTCAAGAATGGAGATATGAGAATGCAATAACAGGTGGAAATTCAAATGAAGAAGGACCAAAACTTGAAGATTTCTTAGGCTGTTACTCAAACCAAAACCAGAATAGTACTAATATTTCCAAAATCAATGTTAATGTTTCACCAAGTTTTTGCACCAACAATACCACAGAGATTGAAACAGGAGAGAATCATCATAATCACAATCACAATCACAATCATAATCATAATCACAATCATCTAACAAACCAATCTTTGATTCACTCTTTCCATCATCCATATAACAATAACACCAACAATCATCATGCTTTAATCAATAATAGTCCTTTGTACAAGTCATGGATGACTCAAACTCAGTTTTCTGAGGGGAAAAGTTCCAATGATGGAAATGGTTGTAGCTTTCAATCTCTTAATTTAACCATGAGTCCAAGTGTTTCAAATGGTGTTAGTGTTGGTGGTGTTGGTGCAGTTTCTAATGTTCAGATGAATGAAGATCCTAGGAAAAGGTCTTTGTCAAAATCTGGTTCTGCTAGAGAACCTGTCCCTCGCAAATCTATTGATACTTTTGGACAAAGAACTTCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCACATTTGTGGGATAATAGTTGCAGAAAAGAAGGACAAACAAGGAAAGGAAGACAAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAAGCTTATGATTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAAAAGGAACTTGAAGAAATGAAGAACATGACTAGGCAAGAATTTGTGGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGAATCGGACGGGTTGCGGGAAACAAAGACTTGTATCTTGGTACATTTAGCACGCAAGAAGAGGCTGCAGAAGCATATGATATTGCAGCAATCAAGTTTAGAGGAACAAGTGCTGTGACAAACTTTGACATAAGTAGGTATGATGTCAAGAGAATTTGCTCAAGCTCAACTCTAATCGCGGGAGATCTCGCGAAACGGTCACCTAAGGAACCCGTGCCTACTACTACTACAGCTGCTGCCGAGGACTTCAATCCGTGTGGCAGTACGTCGACGTCGACACCTTCTCAGCCGCCTCCTCTAGCTATTACCGATGGCGAACAACAGCATTCTGATGAATTGTCCAACATGGTGTGGAATTCGAACAAGGAGGAGCAACCACTGCAGAACGAGTGCGGAAATAACGCCAATGCCAACATCGCTGAATCGTCCCAGCACGGTTCGCCGAGCAACAAGAATGAGATGAATGCTCAAAGTCTTAAATTACCAAATGAGTTTGGAGGGAGTGGAGCAGATTATGGACATGGTTACTTCACATTGCAAGGACCAAAATTTGATGATGGAAACAATGAAAATGACCACATGAATAACAATAGGCTTGGGAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1794 0.403 MSNWLGFSLTPHFGEEFPTENHNHNQNQNHGEGSETGRNYVPSSSSHHHQHHQHLSVMPLRSDGSLCVSDSFTPQEWRYENAITGGNSNEEGPKLEDFLGCYSNQNQNSTNISKINVNVSPSFCTNNTTEIETGENHHNHNHNHNHNHNHNHLTNQSLIHSFHHPYNNNTNNHHALINNSPLYKSWMTQTQFSEGKSSNDGNGCSFQSLNLTMSPSVSNGVSVGGVGAVSNVQMNEDPRKRSLSKSGSAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYEKELEEMKNMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKEPVPTTTTAAAEDFNPCGSTSTSTPSQPPPLAITDGEQQHSDELSNMVWNSNKEEQPLQNECGNNANANIAESSQHGSPSNKNEMNAQSLKLPNEFGGSGADYGHGYFTLQGPKFDDGNNENDHMNNNRLGNLGLVNQVPMFALWNE 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi254g00045 597 CDD AP2 365 426 IPR001471 GO:0003700|GO:0006355
Vivi254g00045 597 MobiDBLite consensus disorder prediction 15 57 - -
Vivi254g00045 597 ProSiteProfiles AP2/ERF domain profile. 366 424 IPR001471 GO:0003700|GO:0006355
Vivi254g00045 597 SUPERFAMILY DNA-binding domain 365 426 IPR016177 GO:0003677
Vivi254g00045 597 MobiDBLite consensus disorder prediction 451 491 - -
Vivi254g00045 597 ProSiteProfiles AP2/ERF domain profile. 267 330 IPR001471 GO:0003700|GO:0006355
Vivi254g00045 597 SMART rav1_2 366 430 IPR001471 GO:0003700|GO:0006355
Vivi254g00045 597 SMART rav1_2 267 336 IPR001471 GO:0003700|GO:0006355
Vivi254g00045 597 FunFam AP2-like ethylene-responsive transcription factor ANT 266 332 - -
Vivi254g00045 597 Gene3D AP2/ERF domain 266 332 IPR036955 GO:0003700|GO:0006355
Vivi254g00045 597 Gene3D AP2/ERF domain 366 426 IPR036955 GO:0003700|GO:0006355
Vivi254g00045 597 FunFam AP2-like ethylene-responsive transcription factor 365 426 - -
Vivi254g00045 597 SUPERFAMILY DNA-binding domain 266 332 IPR016177 GO:0003677
Vivi254g00045 597 MobiDBLite consensus disorder prediction 229 265 - -
Vivi254g00045 597 MobiDBLite consensus disorder prediction 20 44 - -
Vivi254g00045 597 CDD AP2 266 332 IPR001471 GO:0003700|GO:0006355
Vivi254g00045 597 MobiDBLite consensus disorder prediction 445 491 - -
Vivi254g00045 597 MobiDBLite consensus disorder prediction 507 536 - -
Vivi254g00045 597 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 90 514 - -
Vivi254g00045 597 PRINTS Ethylene responsive element binding protein signature 406 426 IPR001471 GO:0003700|GO:0006355
Vivi254g00045 597 PRINTS Ethylene responsive element binding protein signature 268 279 IPR001471 GO:0003700|GO:0006355
Vivi254g00045 597 Pfam AP2 domain 365 416 IPR001471 GO:0003700|GO:0006355
Vivi254g00045 597 Pfam AP2 domain 267 322 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi254g00045 1 449 AP2-EREBP Transcription Factor Family AT1G72570 47.908 2.94e-130 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi254g00045 AP2 1.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi254g00045 K09285 - gmx:100809762 776.163