Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi254g00044 ATGAGTAACTGGTTAGGATTTTCTCTCACTCCACACTTTGGTGAAGAATTTCCTACAGAAAACCATAACCATAACCAGAATCAAAACCATGGTGAAGGTTCAGAAACTGGAAGAAACTATGTTCCTTCTTCTTCTTCTCATCATCATCAACATCATCAACACCTTTCTGTTATGCCTCTACGATCTGATGGTTCACTTTGTGTTTCTGATTCCTTTACACCTCAAGAATGGAGATATGAGAATGCAATAACAGGTGGAAATTCAAATGAAGAAGGACCAAAACTTGAAGATTTCTTAGGCTGTTACTCAAACCAAAACCAGAATAGTACTAATATTTCCAAAATCAATGTTAATGTTTCACCAAGTTTTTGCACCAACAATACCACAGAGATTGAAACAGGAGAGAATCATCATAATCACAATCACAATCACAATCATAATCATAATCACAATCATCTAACAAACCAATCTTTGATTCACTCTTTCCATCATCCATATAACAATAACACCAACAATCATCATGCTTTAATCAATAATAGTCCTTTGTACAAGTCATGGATGACTCAAACTCAGTTTTCTGAGGGGAAAAGTTCCAATGATGGAAATGGTTGTAGCTTTCAATCTCTTAATTTAACCATGAGTCCAAGTGTTTCAAATGGTGTTAGTGTTGGTGGTGTTGGTGCAGTTTCTAATGTTCAGATGAATGAAGATCCTAGGAAAAGGTCTTTGTCAAAATCTGGTTCTGCTAGAGAACCTGTCCCTCGCAAATCTATTGATACTTTTGGACAAAGAACTTCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCACATTTGTGGGATAATAGTTGCAGAAAAGAAGGACAAACAAGGAAAGGAAGACAAGTTTATCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAAGCTTATGATTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAAAAGGAACTTGAAGAAATGAAGAACATGACTAGGCAAGAATTTGTGGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGAATCGGACGGGTTGCGGGAAACAAAGACTTGTATCTTGGTACATTTAGCACGCAAGAAGAGGCTGCAGAAGCATATGATATTGCAGCAATCAAGTTTAGAGGAACAAGTGCTGTGACAAACTTTGACATAAGTAGGTATGATGTCAAGAGAATTTGCTCAAGCTCAACTCTAATCGCGGGAGATCTCGCGAAACGGTCACCTAAGGAACCCGTGCCTACTACTACTACAGCTGCTGCCGAGGACTTCAATCCGTGTGGCAGTACGTCGACGTCGACACCTTCTCAGCCGCCTCCTCTAGCTATTACCGATGGCGAACAACAGCATTCTGATGAATTGTCCAACATGGTGTGGAATTCGAACAAGGAGGAGCAACCACTGCAGAACGAGTGCGGAAATAACGCCAATGCCAACATCGCTGAATCGTCCCAGCACGGTTCGCCGAGCAACAAGAATGAGATGAATGCTCAAAGTCTTAAATTACCAAATGAGTTTGGAGGGAGTGGAGCAGATTATGGACATGGTTACTTCACATTGCAAGGACCAAAATTTGATGATGGAAACAATGAAAATGACCACATGAATAACAATAGGCTTGGGAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1803 0.4021 MSNWLGFSLTPHFGEEFPTENHNHNQNQNHGEGSETGRNYVPSSSSHHHQHHQHLSVMPLRSDGSLCVSDSFTPQEWRYENAITGGNSNEEGPKLEDFLGCYSNQNQNSTNISKINVNVSPSFCTNNTTEIETGENHHNHNHNHNHNHNHNHLTNQSLIHSFHHPYNNNTNNHHALINNSPLYKSWMTQTQFSEGKSSNDGNGCSFQSLNLTMSPSVSNGVSVGGVGAVSNVQMNEDPRKRSLSKSGSAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYEKELEEMKNMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKEPVPTTTTAAAEDFNPCGSTSTSTPSQPPPLAITDGEQQHSDELSNMVWNSNKEEQPLQNECGNNANANIAESSQHGSPSNKNEMNAQSLKLPNEFGGSGADYGHGYFTLQGPKFDDGNNENDHMNNNRLGNLGLVNQVPMFALWNE 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi254g00044 600 ProSiteProfiles AP2/ERF domain profile. 369 427 IPR001471 GO:0003700|GO:0006355
Vivi254g00044 600 MobiDBLite consensus disorder prediction 454 494 - -
Vivi254g00044 600 FunFam AP2-like ethylene-responsive transcription factor ANT 266 335 - -
Vivi254g00044 600 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 91 513 - -
Vivi254g00044 600 MobiDBLite consensus disorder prediction 15 57 - -
Vivi254g00044 600 CDD AP2 368 429 IPR001471 GO:0003700|GO:0006355
Vivi254g00044 600 Pfam AP2 domain 368 419 IPR001471 GO:0003700|GO:0006355
Vivi254g00044 600 Pfam AP2 domain 267 325 IPR001471 GO:0003700|GO:0006355
Vivi254g00044 600 ProSiteProfiles AP2/ERF domain profile. 267 333 IPR001471 GO:0003700|GO:0006355
Vivi254g00044 600 Gene3D AP2/ERF domain 266 335 IPR036955 GO:0003700|GO:0006355
Vivi254g00044 600 Gene3D AP2/ERF domain 369 429 IPR036955 GO:0003700|GO:0006355
Vivi254g00044 600 FunFam AP2-like ethylene-responsive transcription factor 368 429 - -
Vivi254g00044 600 CDD AP2 266 335 IPR001471 GO:0003700|GO:0006355
Vivi254g00044 600 MobiDBLite consensus disorder prediction 448 494 - -
Vivi254g00044 600 SUPERFAMILY DNA-binding domain 368 429 IPR016177 GO:0003677
Vivi254g00044 600 MobiDBLite consensus disorder prediction 20 44 - -
Vivi254g00044 600 SMART rav1_2 267 339 IPR001471 GO:0003700|GO:0006355
Vivi254g00044 600 SMART rav1_2 369 433 IPR001471 GO:0003700|GO:0006355
Vivi254g00044 600 PRINTS Ethylene responsive element binding protein signature 268 279 IPR001471 GO:0003700|GO:0006355
Vivi254g00044 600 PRINTS Ethylene responsive element binding protein signature 409 429 IPR001471 GO:0003700|GO:0006355
Vivi254g00044 600 SUPERFAMILY DNA-binding domain 266 335 IPR016177 GO:0003677
Vivi254g00044 600 MobiDBLite consensus disorder prediction 229 264 - -
Vivi254g00044 600 MobiDBLite consensus disorder prediction 510 539 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi254g00044 1 452 AP2-EREBP Transcription Factor Family AT1G72570 48.536 5.85e-135 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi254g00044 AP2 7.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi254g00044 K09285 - gmx:100809762 787.334