Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi254g00042 ATGATGAGTAGTAGTGCAAGTTCAAGAAATAGGTCACCTTTTACACCAAATCAATGGCAAGAGCTTGAACAACAAGCCCTTGTTTTCAAATACATGGTTACAGGTACACCTATTCCTCCAGATCTTATCTTCTCCATCAAAAGAAGCTTGGACAGTTCTATATCTTCAAGAATCTTTCCACATCCTCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGTTCAAAGGAAGCATATCCAGACTCTAAGTACTGTGAAAGACACATGCACAGAGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTAGTTGTGTCTTCTTCATCATCAACAACATCAACAAACACAAACACAATCTCTCTATCTCAATCTCAATCTCAACCTCAATCTCAACCTCAATCTCAAACCAATACCAGAAACCTCTCCTTGAACAACAGTTCCACCTTAACCTCACCTTCTTCTTTTCCTTTTCATGAACCTCAACAACAACAACAACACTTTTCTCAACCCTACCAAAACCCTTACTTCAATTATTCTCAGCAATCTATCACTGGCTCTAAACCTCTTGATCATTCTGAGTTTCAACCTCATCATGATGGTTCTACTACTCACCACCTCTTTCTGGATTCTGGATCTTATTCTCAGGATGAAAAAGACTATAGGAGGCATGTGCAAGTTCAAGGGATAAGAGATGGAACTGTGGATGAAAGAACTTTCTTTCCAGAAGCTTCAGGTTCTTCTAGGAGTTATCATCATGATCCATACCAACAACAACAACAACTGAATTCCTTTAAGTCATCATCATATGCAAGCTCACAATTTCACAACATCAATGATGATAATCCAAGACAGCAACAGCAGCAACAACAAGAACAACACTGTTTTGTTTTAGGCACAGACTTCAAATCAACAAGGCCAACAACAAACAAGGACAAAGAAAGTGAGACAACTCAAAAACCTCTTCATCATTTCTTTGGAGAGTGGACACCAAAGAACACAGATTCTTGGCTAGATCTTGCTTCCAACTCCAGAATTCCAACAGATGAATGA 1107 0.3975 MMSSSASSRNRSPFTPNQWQELEQQALVFKYMVTGTPIPPDLIFSIKRSLDSSISSRIFPHPPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVELVVSSSSSTTSTNTNTISLSQSQSQPQSQPQSQTNTRNLSLNNSSTLTSPSSFPFHEPQQQQQHFSQPYQNPYFNYSQQSITGSKPLDHSEFQPHHDGSTTHHLFLDSGSYSQDEKDYRRHVQVQGIRDGTVDERTFFPEASGSSRSYHHDPYQQQQQLNSFKSSSYASSQFHNINDDNPRQQQQQQQEQHCFVLGTDFKSTRPTTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSRIPTDE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi254g00042 368 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Vivi254g00042 368 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi254g00042 368 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi254g00042 368 MobiDBLite consensus disorder prediction 230 249 - -
Vivi254g00042 368 MobiDBLite consensus disorder prediction 353 368 - -
Vivi254g00042 368 MobiDBLite consensus disorder prediction 259 323 - -
Vivi254g00042 368 PANTHER GROWTH-REGULATING FACTOR 5 11 356 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vivi254g00042 368 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi254g00042 368 MobiDBLite consensus disorder prediction 105 368 - -
Vivi254g00042 368 MobiDBLite consensus disorder prediction 324 339 - -
Vivi254g00042 368 MobiDBLite consensus disorder prediction 120 208 - -
Vivi254g00042 368 Pfam WRC 79 121 IPR014977 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi254g00042 1 346 GRF Transcription Factor Family AT3G13960 40.943 3.77e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vivi254g00042 WRC 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi254g00042 - - aprc:113851425 430.254